RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 RPAINQ86UA6 219 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 SLF2Q8IX21 1173 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 GLT8D2Q9H1C3 349 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 GANQ9H2C0 597 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 TMEM260Q9NX78 707 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 SWAP70Q9UH65 585 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 C10orf71Q711Q0 1435 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 DDX60LQ5H9U9 1706 aaKnown RBP17.85■□□□□ 0.45
SHMT2-231ENST00000557433 PITPNM2Q9BZ72 1349 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 A0A087X0T9 212 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 GPR75-ASB3A0A0A6YYF3 556 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 A0A0G2JS52 829 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 POTEMA6NI47 508 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 RAD51CO43502 376 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 KIF4AO95239 1232 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 TDP2O95551 362 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 FAM228BP0C875 321 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 FNTAP49354 379 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 ATP2B2Q01814 1243 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 LRRC41Q15345 812 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 NLRP14Q86W24 1093 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 NBPF5PQ86XG9 351 aaPredicted RBP17.85■□□□□ 0.45
SHMT2-231ENST00000557433 MAPKAPK5Q8IW41 473 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 MARCH10Q8NA82 808 aaPredicted RBP17.85■□□□□ 0.45
SHMT2-231ENST00000557433 MYCBPAPQ8TBZ2 947 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 NCAPGQ9BPX3 1015 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 TACO1Q9BSH4 297 aaKnown RBP17.85■□□□□ 0.45
SHMT2-231ENST00000557433 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.85■□□□□ 0.45
SHMT2-231ENST00000557433 NARFQ9UHQ1 456 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 INTUQ9ULD6 942 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 PLAAQ9Y263 795 aa17.85■□□□□ 0.45
SHMT2-231ENST00000557433 A0A0A6YYK5 440 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-231ENST00000557433 CETN3O15182 167 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 PDHBP11177 359 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 GUCY2FP51841 1108 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 SPDYCQ5MJ68 293 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 AGBL2Q5U5Z8 902 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 TTC19Q6DKK2 380 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-231ENST00000557433 MAATS1Q7Z4T9 603 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 TXNRD3Q86VQ6 643 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 CEP95Q96GE4 821 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 CCT8L2Q96SF2 557 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 SLITRK6Q9H5Y7 841 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 ACTR5Q9H9F9 607 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-231ENST00000557433 FBXL5Q9UKA1 691 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 PCDHA2Q9Y5H9 948 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 CAPN7Q9Y6W3 813 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 H0YHG0 523 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 SNHG28P0DPA3 235 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 CEP85LQ5SZL2 805 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 RC3H1Q5TC82 1133 aaKnown RBP17.84■□□□□ 0.45
SHMT2-231ENST00000557433 KCNK18Q7Z418 384 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 FRMD5Q7Z6J6 570 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 FAM163AQ96GL9 167 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-231ENST00000557433 MXD3Q9BW11 206 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 KCTD10Q9H3F6 313 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 CPVLQ9H3G5 476 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 VAT1LQ9HCJ6 419 aa17.84■□□□□ 0.45
SHMT2-231ENST00000557433 DDX25Q9UHL0 483 aaKnown RBP17.84■□□□□ 0.45
SHMT2-231ENST00000557433 PNMA6FA0A0J9YX94 578 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 ESYT3A0FGR9 886 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 PGRMC1O00264 195 aaKnown RBP17.83■□□□□ 0.44
SHMT2-231ENST00000557433 EDIL3O43854 480 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 GFPT2O94808 682 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 PRKCIP41743 596 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 BTDP43251 543 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 CLK2P49760 499 aaKnown RBP17.83■□□□□ 0.44
SHMT2-231ENST00000557433 MRPL12P52815 198 aaKnown RBP17.83■□□□□ 0.44
SHMT2-231ENST00000557433 NPEPPSP55786 919 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 GUCY1A3Q02108 690 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 TMC4Q7Z404 712 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 VPS36Q86VN1 386 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 TAX1BP1Q86VP1 789 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 TEX11Q8IYF3 940 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 SYCE1Q8N0S2 351 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 NUDT12Q9BQG2 462 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 ADAMTS1Q9UHI8 967 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 SAP30BPQ9UHR5 308 aaKnown RBP17.83■□□□□ 0.44
SHMT2-231ENST00000557433 NHSQ6T4R5 1651 aa17.83■□□□□ 0.44
SHMT2-231ENST00000557433 FRMD3A2A2Y4 597 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 USP17L5A8MUK1 530 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 KCNK3O14649 394 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 FLOT1O75955 427 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 TM4SF1P30408 202 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 HLTFQ14527 1009 aaKnown RBP eCLIP17.82■□□□□ 0.44
SHMT2-231ENST00000557433 DIXDC1Q155Q3 683 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 PPP2R5EQ16537 467 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 BICDL1Q6ZP65 573 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 FAM133AQ8N9E0 248 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 LINC00116Q8NCU8 138 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 P3H4Q92791 437 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 MYCBPQ99417 103 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-231ENST00000557433 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.82■□□□□ 0.447e-8■■□□□ 13.7
SHMT2-231ENST00000557433 PCDHA12Q9UN75 941 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 STK24Q9Y6E0 443 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 KIF13BQ9NQT8 1826 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 ZSCAN5CA6NGD5 496 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-231ENST00000557433 MARCH6O60337 910 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 CDR1P51861 262 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 MNAT1P51948 309 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms