RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 PRDM5Q9NQX1 630 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-217ENST00000555116 TLR3O15455 904 aaKnown RBP16.12■□□□□ 0.17
SHMT2-217ENST00000555116 MSH4O15457 936 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 B4GALT4O60513 344 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 CCNE2O96020 404 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 CHMP4BP1P59074 171 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 ACTR2P61160 394 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 NBR1Q14596 966 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 FAM47CQ5HY64 1035 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 UTP14CQ5TAP6 766 aaKnown RBP16.12■□□□□ 0.17
SHMT2-217ENST00000555116 TRIM50Q86XT4 487 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 TMEM39AQ9NV64 488 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 H3BRB1 525 aa16.11■□□□□ 0.17
SHMT2-217ENST00000555116 DDX39AO00148 427 aaKnown RBP16.11■□□□□ 0.17
SHMT2-217ENST00000555116 LGR5O75473 907 aa16.11■□□□□ 0.17
SHMT2-217ENST00000555116 ATG7O95352 703 aa16.11■□□□□ 0.17
SHMT2-217ENST00000555116 ITGB8P26012 769 aa16.11■□□□□ 0.17
SHMT2-217ENST00000555116 SAFBQ15424 915 aaKnown RBP eCLIP16.11■□□□□ 0.17
SHMT2-217ENST00000555116 LETM2Q2VYF4 491 aa16.11■□□□□ 0.17
SHMT2-217ENST00000555116 SLC5A5Q92911 643 aa16.11■□□□□ 0.17
SHMT2-217ENST00000555116 PCYT2Q99447 389 aa16.11■□□□□ 0.17
SHMT2-217ENST00000555116 TUT1Q9H6E5 874 aaKnown RBP16.11■□□□□ 0.17
SHMT2-217ENST00000555116 TBC1D22BQ9NU19 505 aa16.11■□□□□ 0.17
SHMT2-217ENST00000555116 TRMT13Q9NUP7 481 aaKnown RBP16.11■□□□□ 0.17
SHMT2-217ENST00000555116 HDAC6Q9UBN7 1215 aa16.11■□□□□ 0.17
SHMT2-217ENST00000555116 SLC37A4O43826 429 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 GJB2P29033 226 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 PPP4R3AQ6IN85 833 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 PRKAG2Q9UGJ0 569 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 DDX25Q9UHL0 483 aaKnown RBP16.1■□□□□ 0.17
SHMT2-217ENST00000555116 EMSYQ7Z589 1322 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 GCFC2P16383 781 aaKnown RBP16.1■□□□□ 0.17
SHMT2-217ENST00000555116 MAGEA10P43363 369 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-217ENST00000555116 GDF6Q6KF10 455 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-217ENST00000555116 ETNPPLQ8TBG4 499 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 GJA10Q969M2 543 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 SNX21Q969T3 373 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 CTAGE1Q96RT6 745 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 GDF15Q99988 308 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 FOXP1Q9H334 677 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-217ENST00000555116 GTF2IRD1Q9UHL9 959 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 SMC3Q9UQE7 1217 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 KIF3AQ9Y496 699 aa16.1■□□□□ 0.17
SHMT2-217ENST00000555116 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-217ENST00000555116 HIC1Q14526 733 aa16.09■□□□□ 0.17
SHMT2-217ENST00000555116 ZNF746Q6NUN9 644 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-217ENST00000555116 ABHD15Q6UXT9 468 aa16.09■□□□□ 0.17
SHMT2-217ENST00000555116 C7orf31Q8N865 590 aa16.09■□□□□ 0.17
SHMT2-217ENST00000555116 RIT2Q99578 217 aa16.09■□□□□ 0.17
SHMT2-217ENST00000555116 NAP1L4Q99733 375 aaKnown RBP16.09■□□□□ 0.17
SHMT2-217ENST00000555116 PRO3102Q9H379 93 aa16.09■□□□□ 0.17
SHMT2-217ENST00000555116 ZNF215Q9UL58 517 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-217ENST00000555116 IGKV6D-21A0A0A0MT36 114 aa16.08■□□□□ 0.17
SHMT2-217ENST00000555116 KIF28PB7ZC32 967 aa16.08■□□□□ 0.17
SHMT2-217ENST00000555116 WNT7AO00755 349 aa16.08■□□□□ 0.17
SHMT2-217ENST00000555116 CCNT1O60563 726 aaKnown RBP16.08■□□□□ 0.17
SHMT2-217ENST00000555116 SUPT20HL2P0C7V6 817 aa16.08■□□□□ 0.17
SHMT2-217ENST00000555116 HOXC8P31273 242 aa16.08■□□□□ 0.17
SHMT2-217ENST00000555116 SMARCAD1Q9H4L7 1026 aa16.08■□□□□ 0.17
SHMT2-217ENST00000555116 KCNMB3Q9NPA1 279 aa16.08■□□□□ 0.17
SHMT2-217ENST00000555116 TRIOBPQ9H2D6 2365 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 K7ELQ4 463 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-217ENST00000555116 PSMD10O75832 226 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 TIMP1P01033 207 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 SMIM10L2AP0DMW4 78 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 SMIM10L2BP0DMW5 78 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 CYP2C9P11712 490 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 RAG1P15918 1043 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 MDM2Q00987 491 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-217ENST00000555116 KRT76Q01546 638 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 PTGISQ16647 500 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 LRCH2Q5VUJ6 765 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 BADQ92934 168 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 NOC4LQ9BVI4 516 aaKnown RBP16.08■□□□□ 0.16
SHMT2-217ENST00000555116 RNPEPQ9H4A4 650 aa16.08■□□□□ 0.16
SHMT2-217ENST00000555116 SCN5AQ14524 2016 aa16.07■□□□□ 0.16
SHMT2-217ENST00000555116 GAS7O60861 476 aa16.07■□□□□ 0.16
SHMT2-217ENST00000555116 U2AF2P26368 475 aaKnown RBP eCLIP16.07■□□□□ 0.164e-8■■□□□ 14.1
SHMT2-217ENST00000555116 ZNF200P98182 395 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-217ENST00000555116 B3GNT9Q6UX72 402 aa16.07■□□□□ 0.16
SHMT2-217ENST00000555116 CHRDL2Q6WN34 429 aa16.07■□□□□ 0.16
SHMT2-217ENST00000555116 GLG1Q92896 1179 aa16.07■□□□□ 0.16
SHMT2-217ENST00000555116 LBHD1Q9BQE6 289 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-217ENST00000555116 TEKT3Q9BXF9 490 aa16.07■□□□□ 0.16
SHMT2-217ENST00000555116 TANC1Q9C0D5 1861 aa16.07■□□□□ 0.16
SHMT2-217ENST00000555116 UNC45AQ9H3U1 944 aa16.07■□□□□ 0.16
SHMT2-217ENST00000555116 ERAP1Q9NZ08 941 aa16.07■□□□□ 0.16
SHMT2-217ENST00000555116 BMP8BP34820 402 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 STAT5BP51692 787 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 MIS18BP1Q6P0N0 1132 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 PLPPR4Q7Z2D5 763 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 POTEDQ86YR6 584 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 NOSTRINQ8IVI9 506 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 CCDC60Q8IWA6 550 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-217ENST00000555116 SMAP1Q8IYB5 467 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-217ENST00000555116 HAS1Q92839 578 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 FAM20AQ96MK3 541 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 PPP1R12CQ9BZL4 782 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 HIPK3Q9H422 1215 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 COLQQ9Y215 455 aaPredicted RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms