RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 FAM160B2Q86V87 743 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 MNS1Q8NEH6 495 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 PCMTD1Q96MG8 357 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-212ENST00000554467 NT5C3AQ9H0P0 336 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 BHMT2Q9H2M3 363 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 ZSWIM4Q9H7M6 989 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 ARHGAP6O43182 974 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 SRLQ86TD4 932 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 PRPF38AQ8NAV1 312 aaKnown RBP12.95□□□□□ -0.34
SHMT2-212ENST00000554467 EIF2AK1Q9BQI3 630 aaKnown RBP12.95□□□□□ -0.34
SHMT2-212ENST00000554467 IRX2Q9BZI1 471 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-212ENST00000554467 THAP9Q9H5L6 903 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.95□□□□□ -0.34
SHMT2-212ENST00000554467 ZHX2Q9Y6X8 837 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 ATAD5Q96QE3 1844 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 KDM3AQ9Y4C1 1321 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 PEX10O60683 326 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 TBC1D8O95759 1140 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 CASP5P51878 434 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 HMGCS2P54868 508 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 FAM26FQ5R3K3 315 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 MB21D1Q8N884 522 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 SYNPO2Q9UMS6 1093 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 PVALEFA0A1B0GWK0 134 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 BICDL2A1A5D9 508 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 LGALS16A8MUM7 142 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 CTNND1O60716 968 aaKnown RBP12.95□□□□□ -0.34
SHMT2-212ENST00000554467 OAS2P29728 719 aaKnown RBP12.95□□□□□ -0.34
SHMT2-212ENST00000554467 CIITAP33076 1130 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 GTF2A1P52655 376 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-212ENST00000554467 SLC12A3P55017 1021 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 ICE2Q659A1 982 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 CCDC155Q8N6L0 562 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 ATG4CQ96DT6 458 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 DYDC2Q96IM9 177 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 NOC4LQ9BVI4 516 aaKnown RBP12.95□□□□□ -0.34
SHMT2-212ENST00000554467 LZTFL1Q9NQ48 299 aa12.95□□□□□ -0.34
SHMT2-212ENST00000554467 BMP2KQ9NSY1 1161 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-212ENST00000554467 TTC26A0AVF1 554 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 DDNO94850 711 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-212ENST00000554467 ICAM1P05362 532 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 EIF2AK2P19525 551 aaKnown RBP12.94□□□□□ -0.34
SHMT2-212ENST00000554467 KRT9P35527 623 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 HAUS3Q68CZ6 603 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 MOXD1Q6UVY6 613 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 NSMFQ6X4W1 530 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 SH2D3AQ9BRG2 576 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 RUSC1Q9BVN2 902 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 WDR11Q9BZH6 1224 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 IKZF4Q9H2S9 585 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 MRPL44Q9H9J2 332 aaKnown RBP12.94□□□□□ -0.34
SHMT2-212ENST00000554467 RNF216Q9NWF9 866 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-212ENST00000554467 DNM3Q9UQ16 869 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 STX10O60499 249 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 GAS7O60861 476 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 CEP55Q53EZ4 464 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 CENPPQ6IPU0 288 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 PACS2Q86VP3 889 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 ERMNQ8TAM6 284 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 CLEC4DQ8WXI8 215 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 UPF1Q92900 1129 aaKnown RBP eCLIP12.94□□□□□ -0.344e-7■■■■□ 25.7
SHMT2-212ENST00000554467 REEP2Q9BRK0 252 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 ZNF577Q9BSK1 485 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 KIAA1683Q9H0B3 1180 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 RIPK3Q9Y572 518 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 CTDP1Q9Y5B0 961 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-212ENST00000554467 POLR2AP24928 1970 aaKnown RBP12.94□□□□□ -0.34
SHMT2-212ENST00000554467 WDR46O15213 610 aaKnown RBP12.94□□□□□ -0.34
SHMT2-212ENST00000554467 EEF1GP26641 437 aaKnown RBP12.94□□□□□ -0.34
SHMT2-212ENST00000554467 TBC1D8BQ0IIM8 1120 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 HYIQ5T013 277 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 MYOCDQ8IZQ8 938 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 ACRBPQ8NEB7 543 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 FAM20AQ96MK3 541 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 CHP1Q99653 195 aa12.94□□□□□ -0.34
SHMT2-212ENST00000554467 WRAP73Q9P2S5 460 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-212ENST00000554467 ABL1P00519 1130 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 ITGB5P18084 799 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 RPA1P27694 616 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 ERVK-24P63145 666 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 EHHADHQ08426 723 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 TEX35Q5T0J7 233 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 OTOP1Q7RTM1 612 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 BANK1Q8NDB2 785 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 ZNF507Q8TCN5 953 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 AGPAT5Q9NUQ2 364 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 GPRC5DQ9NZD1 345 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 RRP15Q9Y3B9 282 aaKnown RBP12.93□□□□□ -0.34
SHMT2-212ENST00000554467 TRAF5O00463 557 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 CYP3A4P08684 503 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 MYCLP12524 364 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-212ENST00000554467 GNG11P61952 73 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 MIIPQ5JXC2 388 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 SFR1Q86XK3 245 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 FHDC1Q9C0D6 1143 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-212ENST00000554467 PICK1Q9NRD5 415 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 ABHD10Q9NUJ1 306 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 SORBS3O60504 671 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 FOXR1Q6PIV2 292 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 MAEAQ7L5Y9 396 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms