RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 TRPV6Q9H1D0 765 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 GDPD2Q9HCC8 539 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 PCDHA6Q9UN73 950 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 PCDHA8Q9Y5H6 950 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 BAZ2BQ9UIF8 2168 aaKnown RBP16.42■□□□□ 0.22
SHMT2-208ENST00000553868 MYO15AQ9UKN7 3530 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 KCNA5P22460 613 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 OAZ1P54368 228 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 SNAP25P60880 206 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 BEX3Q00994 111 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 CEBPZQ03701 1054 aaKnown RBP16.41■□□□□ 0.22
SHMT2-208ENST00000553868 KCTD2Q14681 263 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 USH1GQ495M9 461 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 PRSS33Q8NF86 280 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 GDPD5Q8WTR4 605 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 ANP32EQ9BTT0 268 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 SLC38A10Q9HBR0 1119 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 CCPG1Q9ULG6 757 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 DIS3Q9Y2L1 958 aaKnown RBP16.41■□□□□ 0.22
SHMT2-208ENST00000553868 SCN5AQ14524 2016 aa16.41■□□□□ 0.22
SHMT2-208ENST00000553868 PARP14Q460N5 1801 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 POTEB3A0JP26 581 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 SPTLC2O15270 562 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 CTAGE5O15320 804 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 TRAK2O60296 914 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 FOSP01100 380 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-208ENST00000553868 AP3B2Q13367 1082 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 SLC39A14Q15043 492 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 TTC38Q5R3I4 469 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 POTEBQ6S5H4 581 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 CXCL17Q6UXB2 119 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 DEFB128Q7Z7B8 93 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 RPUSD2Q8IZ73 545 aaKnown RBP16.4■□□□□ 0.22
SHMT2-208ENST00000553868 SAMD3Q8N6K7 520 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 LINC00301Q8NCQ3 95 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 NAP1L4Q99733 375 aaKnown RBP16.4■□□□□ 0.22
SHMT2-208ENST00000553868 CLIC4Q9Y696 253 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 DDX49Q9Y6V7 483 aaKnown RBP16.4■□□□□ 0.22
SHMT2-208ENST00000553868 MYH15Q9Y2K3 1946 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 MCM3APO60318 1980 aa16.4■□□□□ 0.22
SHMT2-208ENST00000553868 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-208ENST00000553868 VWA5AO00534 786 aa16.39■□□□□ 0.21
SHMT2-208ENST00000553868 B4GALT4O60513 344 aa16.39■□□□□ 0.21
SHMT2-208ENST00000553868 PPP6R2O75170 966 aa16.39■□□□□ 0.21
SHMT2-208ENST00000553868 SLC25A27O95847 323 aa16.39■□□□□ 0.21
SHMT2-208ENST00000553868 ME1P48163 572 aa16.39■□□□□ 0.21
SHMT2-208ENST00000553868 ORC2Q13416 577 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-208ENST00000553868 LEXMQ3ZCV2 418 aa16.39■□□□□ 0.21
SHMT2-208ENST00000553868 PTCRAQ6ISU1 281 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-208ENST00000553868 MCF2L2Q86YR7 1114 aa16.39■□□□□ 0.21
SHMT2-208ENST00000553868 UPF3AQ9H1J1 476 aaKnown RBP16.39■□□□□ 0.21
SHMT2-208ENST00000553868 MORC2Q9Y6X9 1032 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-208ENST00000553868 ZFHX2Q9C0A1 2572 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-208ENST00000553868 GRIN2DO15399 1336 aa16.39■□□□□ 0.21
SHMT2-208ENST00000553868 PIK3CDO00329 1044 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 ATP2B1P20020 1258 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 PTGS1P23219 599 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 CLK2P49760 499 aaKnown RBP16.38■□□□□ 0.21
SHMT2-208ENST00000553868 TOB1P50616 345 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-208ENST00000553868 GJA9P57773 515 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 KLHL40Q2TBA0 621 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 TKFCQ3LXA3 575 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 IER5LQ5T953 404 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 JAKMIP3Q5VZ66 844 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 SLC43A3Q8NBI5 491 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 RASGRP4Q8TDF6 673 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 AGBL1Q96MI9 1066 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 FTOQ9C0B1 505 aaKnown RBP eCLIP16.38■□□□□ 0.21
SHMT2-208ENST00000553868 MAF1Q9H063 256 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 EHMT1Q9H9B1 1298 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.38■□□□□ 0.21
SHMT2-208ENST00000553868 ADAMTS5Q9UNA0 930 aa16.38■□□□□ 0.21
SHMT2-208ENST00000553868 LCHNA4D1U4 455 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 SPDYE3A6NKU9 549 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 GCOM1H8Y6P7 765 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-208ENST00000553868 ATP2A1O14983 1001 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 POLR2MP0CAP2 368 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 FOXK2Q01167 660 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 ACVR2BQ13705 512 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 CCDC144BQ3MJ40 725 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 EARS2Q5JPH6 523 aaKnown RBP16.37■□□□□ 0.21
SHMT2-208ENST00000553868 NEK8Q86SG6 692 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 RIOX2Q8IUF8 465 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 CPXCR1Q8N123 301 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 SPC25Q9HBM1 224 aa16.37■□□□□ 0.21
SHMT2-208ENST00000553868 MAP3K20Q9NYL2 800 aaKnown RBP16.37■□□□□ 0.21
SHMT2-208ENST00000553868 DCHS1Q96JQ0 3298 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 FAM205CA6NFA0 338 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 GRXCR2A6NFK2 248 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 ITGA7Q13683 1181 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 PTPAQ15257 358 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 UBE2SQ16763 222 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 INF2Q27J81 1249 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 HERC6Q8IVU3 1022 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 TBCKQ8TEA7 893 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 SYAP1Q96A49 352 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-208ENST00000553868 RAVER2Q9HCJ3 691 aaKnown RBP16.36■□□□□ 0.21
SHMT2-208ENST00000553868 FAM86C1Q9NVL1 165 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 TMEM260Q9NX78 707 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 MTUS1Q9ULD2 1270 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms