RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 CDH22Q9UJ99 828 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 TTC3P53804 2025 aa16.91■□□□□ 0.3
VPS29-209ENST00000551655 DOCK5Q9H7D0 1870 aa16.91■□□□□ 0.3
VPS29-209ENST00000551655 PPFIA3O75145 1194 aa16.91■□□□□ 0.3
VPS29-209ENST00000551655 EIF3JO75822 258 aaKnown RBP16.91■□□□□ 0.3
VPS29-209ENST00000551655 DGKIO75912 1065 aa16.91■□□□□ 0.3
VPS29-209ENST00000551655 BRD1O95696 1058 aa16.91■□□□□ 0.3
VPS29-209ENST00000551655 CHRNA1P02708 482 aa16.91■□□□□ 0.3
VPS29-209ENST00000551655 ZFYP08048 801 aaPredicted RBP16.91■□□□□ 0.3
VPS29-209ENST00000551655 NR3C2P08235 984 aa16.91■□□□□ 0.3
VPS29-209ENST00000551655 RRP12Q5JTH9 1297 aaKnown RBP16.91■□□□□ 0.3
VPS29-209ENST00000551655 CELF3Q5SZQ8 465 aaKnown RBP16.91■□□□□ 0.3
VPS29-209ENST00000551655 TOMM22Q9NS69 142 aa16.91■□□□□ 0.3
VPS29-209ENST00000551655 H3BRB1 525 aa16.9■□□□□ 0.3
VPS29-209ENST00000551655 ENPP3O14638 875 aa16.9■□□□□ 0.3
VPS29-209ENST00000551655 LGALS2P05162 132 aa16.9■□□□□ 0.3
VPS29-209ENST00000551655 MYCLP12524 364 aaPredicted RBP16.9■□□□□ 0.3
VPS29-209ENST00000551655 ATF7P17544 494 aaPredicted RBP16.9■□□□□ 0.3
VPS29-209ENST00000551655 UBA1P22314 1058 aaKnown RBP16.9■□□□□ 0.3
VPS29-209ENST00000551655 CDC37Q16543 378 aaPredicted RBP16.9■□□□□ 0.3
VPS29-209ENST00000551655 LINC01599Q8WXQ3 324 aa16.9■□□□□ 0.3
VPS29-209ENST00000551655 P2RX5Q93086 422 aa16.9■□□□□ 0.3
VPS29-209ENST00000551655 LRRCC1Q9C099 1032 aa16.9■□□□□ 0.3
VPS29-209ENST00000551655 TUT1Q9H6E5 874 aaKnown RBP16.9■□□□□ 0.3
VPS29-209ENST00000551655 TLE6Q9H808 572 aa16.9■□□□□ 0.3
VPS29-209ENST00000551655 PXMP2Q9NR77 195 aa16.9■□□□□ 0.3
VPS29-209ENST00000551655 PNMA2Q9UL42 364 aa16.9■□□□□ 0.3
VPS29-209ENST00000551655 MYO10Q9HD67 2058 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 CAND2O75155 1236 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 GATMP50440 423 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 LPIN1Q14693 890 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 FAM26DQ5JW98 314 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 VPS53Q5VIR6 699 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 DGLUCYQ7Z3D6 616 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 TRIM50Q86XT4 487 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 IL31RAQ8NI17 732 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 ATP8B4Q8TF62 1192 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 CNTNAP3BQ96NU0 1288 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 CNTNAP3Q9BZ76 1288 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 TSHZ2Q9NRE2 1034 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 TELO2Q9Y4R8 837 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 MYH6P13533 1939 aa16.89■□□□□ 0.29
VPS29-209ENST00000551655 EP300Q09472 2414 aaPredicted RBP16.89■□□□□ 0.29
VPS29-209ENST00000551655 ORC4O43929 436 aa16.88■□□□□ 0.29
VPS29-209ENST00000551655 SNHG28P0DPA3 235 aa16.88■□□□□ 0.29
VPS29-209ENST00000551655 RUFY4Q6ZNE9 571 aa16.88■□□□□ 0.29
VPS29-209ENST00000551655 ABCB11O95342 1321 aa16.88■□□□□ 0.29
VPS29-209ENST00000551655 ARHGAP4P98171 946 aa16.87■□□□□ 0.29
VPS29-209ENST00000551655 MICAL1Q8TDZ2 1067 aa16.87■□□□□ 0.29
VPS29-209ENST00000551655 LMBR1Q8WVP7 490 aa16.87■□□□□ 0.29
VPS29-209ENST00000551655 S1PR5Q9H228 398 aa16.87■□□□□ 0.29
VPS29-209ENST00000551655 EHMT1Q9H9B1 1298 aa16.87■□□□□ 0.29
VPS29-209ENST00000551655 ZBTB40Q9NUA8 1239 aa16.87■□□□□ 0.29
VPS29-209ENST00000551655 OPLAHO14841 1288 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 CFBP00751 764 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 MGAT3Q09327 533 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 MTMR3Q13615 1198 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 ZMYM1Q5SVZ6 1142 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 MCTP2Q6DN12 878 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 ASTLQ6HA08 431 aaPredicted RBP16.86■□□□□ 0.29
VPS29-209ENST00000551655 SYCE2Q6PIF2 218 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 CMTR2Q8IYT2 770 aaKnown RBP16.86■□□□□ 0.29
VPS29-209ENST00000551655 NEK1Q96PY6 1258 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 PDCD2LQ9BRP1 358 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 MLXIPQ9HAP2 919 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 ANAPC4Q9UJX5 808 aa16.86■□□□□ 0.29
VPS29-209ENST00000551655 ASGR2P07307 311 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 IBSPP21815 317 aaPredicted RBP16.85■□□□□ 0.29
VPS29-209ENST00000551655 TECP42680 631 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 ADAM17P78536 824 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 DUSP6Q16828 381 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 QRICH1Q2TAL8 776 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 NAALADL2Q58DX5 795 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 LLGL2Q6P1M3 1020 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 RTN4RL1Q86UN2 441 aaPredicted RBP16.85■□□□□ 0.29
VPS29-209ENST00000551655 MCF2L2Q86YR7 1114 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 KIAA2013Q8IYS2 634 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 HCSTQ9UBK5 93 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 SORCS3Q9UPU3 1222 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 CCDC171Q6TFL3 1326 aa16.85■□□□□ 0.29
VPS29-209ENST00000551655 CACNA1GO43497 2377 aa16.84■□□□□ 0.29
VPS29-209ENST00000551655 C2CD4DB7Z1M9 353 aa16.84■□□□□ 0.29
VPS29-209ENST00000551655 PI15O43692 258 aa16.84■□□□□ 0.29
VPS29-209ENST00000551655 FGRP09769 529 aa16.84■□□□□ 0.29
VPS29-209ENST00000551655 HSPD1P10809 573 aaKnown RBP16.84■□□□□ 0.29
VPS29-209ENST00000551655 ERVFC1P60507 584 aa16.84■□□□□ 0.29
VPS29-209ENST00000551655 UTP14CQ5TAP6 766 aaKnown RBP16.84■□□□□ 0.29
VPS29-209ENST00000551655 CWF19L1Q69YN2 538 aaKnown RBP16.84■□□□□ 0.29
VPS29-209ENST00000551655 ANKRD54Q6NXT1 300 aa16.84■□□□□ 0.29
VPS29-209ENST00000551655 ADGRF4Q8IZF3 695 aa16.84■□□□□ 0.29
VPS29-209ENST00000551655 CRIPAKQ8N1N5 446 aa16.84■□□□□ 0.29
VPS29-209ENST00000551655 AGO3Q9H9G7 860 aaKnown RBP16.84■□□□□ 0.29
VPS29-209ENST00000551655 TCP11L1Q9NUJ3 509 aa16.84■□□□□ 0.29
VPS29-209ENST00000551655 TPRP12270 2363 aaKnown RBP16.83■□□□□ 0.28
VPS29-209ENST00000551655 HOXA13P31271 388 aaPredicted RBP16.83■□□□□ 0.28
VPS29-209ENST00000551655 CD52P31358 61 aa16.83■□□□□ 0.28
VPS29-209ENST00000551655 APOBRQ0VD83 1088 aa16.83■□□□□ 0.28
VPS29-209ENST00000551655 PGM5Q15124 567 aa16.83■□□□□ 0.28
VPS29-209ENST00000551655 FBXO47Q5MNV8 452 aa16.83■□□□□ 0.28
VPS29-209ENST00000551655 FLCNQ8NFG4 579 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms