RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 USP17L6PQ6QN14 398 aa14.8□□□□□ -0.04
PTCH1-221ENST00000550914 LMBR1Q8WVP7 490 aa14.8□□□□□ -0.04
PTCH1-221ENST00000550914 GPRASP2Q96D09 838 aa14.8□□□□□ -0.04
PTCH1-221ENST00000550914 YME1L1Q96TA2 773 aa14.8□□□□□ -0.04
PTCH1-221ENST00000550914 MUC6Q6W4X9 2439 aa14.8□□□□□ -0.04
PTCH1-221ENST00000550914 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.79□□□□□ -0.04
PTCH1-221ENST00000550914 H3BNC9 293 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 CTSHP09668 335 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 PLA2G5P39877 138 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 ARHGAP4P98171 946 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 TIGD5Q53EQ6 642 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 TAF2Q6P1X5 1199 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 CASC1Q6TDU7 716 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 TRIM50Q86XT4 487 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 PIBF1Q8WXW3 757 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 TMEM87BQ96K49 555 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 IFIH1Q9BYX4 1025 aaKnown RBP14.79□□□□□ -0.04
PTCH1-221ENST00000550914 RAPGEFL1Q9UHV5 662 aa14.79□□□□□ -0.04
PTCH1-221ENST00000550914 RBM8AQ9Y5S9 174 aaKnown RBP14.79□□□□□ -0.04
PTCH1-221ENST00000550914 RPLP2P05387 115 aaKnown RBP14.78□□□□□ -0.04
PTCH1-221ENST00000550914 CALM1P0DP23 149 aa14.78□□□□□ -0.04
PTCH1-221ENST00000550914 CALM2P0DP24 149 aa14.78□□□□□ -0.04
PTCH1-221ENST00000550914 CALM3P0DP25 149 aa14.78□□□□□ -0.04
PTCH1-221ENST00000550914 MCM5P33992 734 aa14.78□□□□□ -0.04
PTCH1-221ENST00000550914 LIFRP42702 1097 aa14.78□□□□□ -0.04
PTCH1-221ENST00000550914 PUS10Q3MIT2 529 aaKnown RBP14.78□□□□□ -0.04
PTCH1-221ENST00000550914 UTP14CQ5TAP6 766 aaKnown RBP14.78□□□□□ -0.04
PTCH1-221ENST00000550914 TEX2Q8IWB9 1127 aa14.78□□□□□ -0.04
PTCH1-221ENST00000550914 EPHX3Q9H6B9 360 aa14.78□□□□□ -0.04
PTCH1-221ENST00000550914 PSTPIP2Q9H939 334 aa14.78□□□□□ -0.04
PTCH1-221ENST00000550914 C5orf42Q9H799 3197 aa14.77□□□□□ -0.04
PTCH1-221ENST00000550914 ATG2AQ2TAZ0 1938 aa14.77□□□□□ -0.04
PTCH1-221ENST00000550914 LOXHD1Q8IVV2 1947 aa14.77□□□□□ -0.04
PTCH1-221ENST00000550914 SH2B2O14492 632 aaPredicted RBP14.77□□□□□ -0.05
PTCH1-221ENST00000550914 MAFGO15525 162 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 PRC1O43663 620 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 GPR37L1O60883 481 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 KCNA2P16389 499 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 TCF7P36402 384 aaPredicted RBP14.77□□□□□ -0.05
PTCH1-221ENST00000550914 GPM6BQ13491 265 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 COL19A1Q14993 1142 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 TMEM31Q5JXX7 168 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 RSPH3Q86UC2 560 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 TMEM192Q8IY95 271 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 SRBD1Q8N5C6 995 aaKnown RBP14.77□□□□□ -0.05
PTCH1-221ENST00000550914 SEPT1Q8WYJ6 367 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 FAM122AQ96E09 287 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 LRFN3Q9BTN0 628 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 MYL10Q9BUA6 226 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 OSBPL7Q9BZF2 842 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 EHMT1Q9H9B1 1298 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 ERAP1Q9NZ08 941 aa14.77□□□□□ -0.05
PTCH1-221ENST00000550914 MBLAC1A4D2B0 266 aaPredicted RBP14.76□□□□□ -0.05
PTCH1-221ENST00000550914 CCDC69A6NI79 296 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 C5orf67F2Z3F1 127 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 PI4K2BG5E9Z4 385 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 UPP2O95045 317 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 PLEKHA8P1O95397 391 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 CHRNA1P02708 482 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 RB1P06400 928 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 ITGB5P18084 799 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 KCNA5P22460 613 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 SP4Q02446 784 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 PPFIA1Q13136 1202 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 NFXL1Q6ZNB6 911 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 FAM178BQ8IXR5 827 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.76□□□□□ -0.05
PTCH1-221ENST00000550914 NEK9Q8TD19 979 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 IL17RAQ96F46 866 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 SMARCAD1Q9H4L7 1026 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 RWDD3Q9Y3V2 267 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 TELO2Q9Y4R8 837 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 SUPT16HQ9Y5B9 1047 aaKnown RBP14.76□□□□□ -0.05
PTCH1-221ENST00000550914 UBIAD1Q9Y5Z9 338 aa14.76□□□□□ -0.05
PTCH1-221ENST00000550914 GSTTP1A0A1W2PQM5 241 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 SPDYE3A6NKU9 549 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 NCK2O43639 380 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 ATP9AO75110 1047 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 MGAT3Q09327 533 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 MTMR1Q13613 665 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 GRIK4Q16099 956 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 PTCRAQ6ISU1 281 aaPredicted RBP14.75□□□□□ -0.05
PTCH1-221ENST00000550914 FIBCD1Q8N539 461 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 BANK1Q8NDB2 785 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 PABPC5Q96DU9 382 aaKnown RBP14.75□□□□□ -0.05
PTCH1-221ENST00000550914 TUBE1Q9UJT0 475 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 HCN4Q9Y3Q4 1203 aa14.75□□□□□ -0.05
PTCH1-221ENST00000550914 GRXCR2A6NFK2 248 aa14.74□□□□□ -0.05
PTCH1-221ENST00000550914 RRN3P2A6NIE6 340 aa14.74□□□□□ -0.05
PTCH1-221ENST00000550914 LPIN1Q14693 890 aa14.74□□□□□ -0.05
PTCH1-221ENST00000550914 RUFY4Q6ZNE9 571 aa14.74□□□□□ -0.05
PTCH1-221ENST00000550914 SGMS1Q86VZ5 419 aa14.74□□□□□ -0.05
PTCH1-221ENST00000550914 GJD3Q8N144 294 aa14.74□□□□□ -0.05
PTCH1-221ENST00000550914 FANCBQ8NB91 859 aa14.74□□□□□ -0.05
PTCH1-221ENST00000550914 GLG1Q92896 1179 aa14.74□□□□□ -0.05
PTCH1-221ENST00000550914 KHSRPQ92945 711 aaKnown RBP eCLIP14.74□□□□□ -0.05
PTCH1-221ENST00000550914 TNPO1Q92973 898 aaKnown RBP14.74□□□□□ -0.05
PTCH1-221ENST00000550914 CLP1Q92989 425 aaKnown RBP14.74□□□□□ -0.05
PTCH1-221ENST00000550914 C11orf84Q9BUA3 381 aaPredicted RBP14.74□□□□□ -0.05
PTCH1-221ENST00000550914 LSG1Q9H089 658 aaKnown RBP14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms