RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ANO3Q9BYT9 981 aa18.69■□□□□ 0.58
VPS29-207ENST00000549970 KAT6AQ92794 2004 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 CCDC196A0A1B0GTZ2 297 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 CTSHP09668 335 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 GNAT1P11488 350 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 RPS6KB1P23443 525 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 DEFB103AP81534 67 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 ARHGAP4P98171 946 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 CYP2W1Q8TAV3 490 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 SEPT1Q8WYJ6 367 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 MXRA8Q9BRK3 442 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 CERS4Q9HA82 394 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 TMEM260Q9NX78 707 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 EMSYQ7Z589 1322 aa18.68■□□□□ 0.58
VPS29-207ENST00000549970 ABHD14A-ACY1A0A1B0GW23 586 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 GSTTP1A0A1W2PQM5 241 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 MAFGO15525 162 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 TLL1O43897 1013 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 LGR5O75473 907 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 ARHGEF15O94989 841 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 FOSP01100 380 aaPredicted RBP18.67■□□□□ 0.58
VPS29-207ENST00000549970 MARK3P27448 753 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 PSMA5P28066 241 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 IKBKEQ14164 716 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 PFKFB3Q16875 520 aaPredicted RBP18.67■□□□□ 0.58
VPS29-207ENST00000549970 LMBR1Q8WVP7 490 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 KCNH7Q9NS40 1196 aa18.67■□□□□ 0.58
VPS29-207ENST00000549970 SCG2P13521 617 aa18.66■□□□□ 0.58
VPS29-207ENST00000549970 AP3B2Q13367 1082 aa18.66■□□□□ 0.58
VPS29-207ENST00000549970 CCDC85BQ15834 202 aaPredicted RBP18.66■□□□□ 0.58
VPS29-207ENST00000549970 TEX2Q8IWB9 1127 aa18.66■□□□□ 0.58
VPS29-207ENST00000549970 DBF4BQ8NFT6 615 aa18.66■□□□□ 0.58
VPS29-207ENST00000549970 GLG1Q92896 1179 aa18.66■□□□□ 0.58
VPS29-207ENST00000549970 ZBED2Q9BTP6 218 aa18.66■□□□□ 0.58
VPS29-207ENST00000549970 COL25A1Q9BXS0 654 aaPredicted RBP18.66■□□□□ 0.58
VPS29-207ENST00000549970 GLT8D2Q9H1C3 349 aa18.66■□□□□ 0.58
VPS29-207ENST00000549970 JPH1Q9HDC5 661 aaPredicted RBP18.66■□□□□ 0.58
VPS29-207ENST00000549970 PRDM6Q9NQX0 595 aa18.66■□□□□ 0.58
VPS29-207ENST00000549970 NRCAMQ92823 1304 aa18.66■□□□□ 0.58
VPS29-207ENST00000549970 RFXAPO00287 272 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 SREBF1P36956 1147 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 CLK2P49760 499 aaKnown RBP18.65■□□□□ 0.58
VPS29-207ENST00000549970 ADAM17P78536 824 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 TAP1Q03518 808 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 PPFIA1Q13136 1202 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 CEP55Q53EZ4 464 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 JAKMIP3Q5VZ66 844 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 PHKBQ93100 1093 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 ERAP1Q9NZ08 941 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 SLC9A2Q9UBY0 812 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 NID2Q14112 1375 aa18.65■□□□□ 0.58
VPS29-207ENST00000549970 CUL9Q8IWT3 2517 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 LCHNA4D1U4 455 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 EFCAB14O75071 495 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 PPFIA3O75145 1194 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 CAND2O75155 1236 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 ARP10275 920 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 ZNF76P36508 570 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 PLEKHG4Q58EX7 1191 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 FAM117BQ6P1L5 589 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 MICALL1Q8N3F8 863 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 FBXL16Q8N461 479 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 ARNTL2Q8WYA1 636 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 SDF4Q9BRK5 362 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 AGXT2Q9BYV1 514 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 OSBPL7Q9BZF2 842 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 SMARCAD1Q9H4L7 1026 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 SPTBN5Q9NRC6 3674 aaKnown RBP18.64■□□□□ 0.57
VPS29-207ENST00000549970 MICAL3Q7RTP6 2002 aa18.64■□□□□ 0.57
VPS29-207ENST00000549970 EPOPA6NHQ4 379 aa18.63■□□□□ 0.57
VPS29-207ENST00000549970 PRPF3O43395 683 aaKnown RBP18.63■□□□□ 0.57
VPS29-207ENST00000549970 GJB5O95377 273 aa18.63■□□□□ 0.57
VPS29-207ENST00000549970 AKAP17AQ02040 695 aaKnown RBP18.63■□□□□ 0.57
VPS29-207ENST00000549970 GRIK4Q16099 956 aa18.63■□□□□ 0.57
VPS29-207ENST00000549970 PKN1Q16512 942 aa18.63■□□□□ 0.57
VPS29-207ENST00000549970 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.63■□□□□ 0.574e-10■■■■□ 25.2
VPS29-207ENST00000549970 RUFY4Q6ZNE9 571 aa18.63■□□□□ 0.57
VPS29-207ENST00000549970 SPRED2Q7Z698 418 aa18.63■□□□□ 0.57
VPS29-207ENST00000549970 CCDC12Q8WUD4 166 aaPredicted RBP18.63■□□□□ 0.57
VPS29-207ENST00000549970 PCYT2Q99447 389 aa18.63■□□□□ 0.57
VPS29-207ENST00000549970 AGO4Q9HCK5 861 aaKnown RBP18.63■□□□□ 0.57
VPS29-207ENST00000549970 REV3LO60673 3130 aa18.63■□□□□ 0.57
VPS29-207ENST00000549970 ADAMTS3O15072 1205 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 ACTR2P61160 394 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 IGBP1P78318 339 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 CCT2P78371 535 aaKnown RBP18.62■□□□□ 0.57
VPS29-207ENST00000549970 ITGB3BPQ13352 177 aaPredicted RBP18.62■□□□□ 0.57
VPS29-207ENST00000549970 RUFY3Q7L099 469 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 MYOCDQ8IZQ8 938 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 SEPT8Q92599 483 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 SLC26A6Q9BXS9 759 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 ZMYND12Q9H0C1 365 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 AZI2Q9H6S1 392 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 C6orf50Q9HD87 102 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 TUBE1Q9UJT0 475 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 NFASCO94856 1347 aa18.62■□□□□ 0.57
VPS29-207ENST00000549970 TRANK1O15050 2925 aa18.61■□□□□ 0.57
VPS29-207ENST00000549970 ESYT2A0FGR8 921 aa18.61■□□□□ 0.57
VPS29-207ENST00000549970 DDX39AO00148 427 aaKnown RBP18.61■□□□□ 0.57
VPS29-207ENST00000549970 MEIS1O00470 390 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms