RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 PPP6R2O75170 966 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 BMP3P12645 472 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 PTPRAP18433 802 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 ECE1P42892 770 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 SLC1A4P43007 532 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 UBE2HP62256 183 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 ORC2Q13416 577 aaPredicted RBP9.63□□□□□ -0.87
VPS29-203ENST00000546588 DGKZQ13574 1117 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 PTPAQ15257 358 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 SAFBQ15424 915 aaKnown RBP eCLIP9.63□□□□□ -0.87
VPS29-203ENST00000546588 MCTP1Q6DN14 999 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 GPAT2Q6NUI2 795 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 FERMT3Q86UX7 667 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 LINC00301Q8NCQ3 95 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 LEO1Q8WVC0 666 aaPredicted RBP9.63□□□□□ -0.87
VPS29-203ENST00000546588 DCPSQ96C86 337 aaKnown RBP9.63□□□□□ -0.87
VPS29-203ENST00000546588 RRP36Q96EU6 259 aaKnown RBP9.63□□□□□ -0.87
VPS29-203ENST00000546588 ZNF396Q96N95 335 aaPredicted RBP9.63□□□□□ -0.87
VPS29-203ENST00000546588 USP28Q96RU2 1077 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 DUSP9Q99956 384 aaKnown RBP9.63□□□□□ -0.87
VPS29-203ENST00000546588 PCDHA4Q9UN74 947 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 POLIQ9UNA4 740 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 CNPY2Q9Y2B0 182 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 MYPNQ86TC9 1320 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 ZNF236Q9UL36 1845 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 BTBD18B2RXH4 712 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 EML1O00423 815 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 GPR182O15218 404 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 PPP1R11O60927 126 aaPredicted RBP9.62□□□□□ -0.87
VPS29-203ENST00000546588 USP2O75604 605 aaPredicted RBP9.62□□□□□ -0.87
VPS29-203ENST00000546588 GOLGA8HP0CJ92 632 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 VEGFAP15692 232 aaPredicted RBP9.62□□□□□ -0.87
VPS29-203ENST00000546588 INPP5BP32019 993 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 NOS2P35228 1153 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 KRT2P35908 639 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 TOB1P50616 345 aaPredicted RBP9.62□□□□□ -0.87
VPS29-203ENST00000546588 RNF144AP50876 292 aaPredicted RBP9.62□□□□□ -0.87
VPS29-203ENST00000546588 USP14P54578 494 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 ATP2B2Q01814 1243 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 TRAF1Q13077 416 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 FAM26DQ5JW98 314 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 KIAA1755Q5JYT7 1200 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 OTUD7BQ6GQQ9 843 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 MIGA2Q7L4E1 593 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 LYSMD3Q7Z3D4 306 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 USP48Q86UV5 1035 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 FAM160B2Q86V87 743 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 ALDH16A1Q8IZ83 802 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 ADGRF4Q8IZF3 695 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 KCNG4Q8TDN1 519 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 ACER1Q8TDN7 264 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 MYO19Q96H55 970 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 PIGSQ96S52 555 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 NIF3L1Q9GZT8 377 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 GLT8D2Q9H1C3 349 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 RANBP17Q9H2T7 1088 aaKnown RBP9.62□□□□□ -0.87
VPS29-203ENST00000546588 AS3MTQ9HBK9 375 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 KLK14Q9P0G3 267 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 VPS54Q9P1Q0 977 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 PARP2Q9UGN5 583 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 SEC63Q9UGP8 760 aaKnown RBP9.62□□□□□ -0.87
VPS29-203ENST00000546588 ADAMTS5Q9UNA0 930 aa9.62□□□□□ -0.87
VPS29-203ENST00000546588 A0A1W2PQ27 194 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 A0A1W2PQ64 194 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 A0A1W2PQD8 194 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 C19orf81C9J6K1 198 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 GNA11P29992 359 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 STAT2P52630 851 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 FAM193AP78312 1265 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 GUCY1B3Q02153 619 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 CENPCQ03188 943 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 CLN3Q13286 438 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 DSC3Q14574 896 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 SLC39A14Q15043 492 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 SYDE2Q5VT97 1194 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 ANO1Q5XXA6 986 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 MCTP2Q6DN12 878 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 FAM173BQ6P4H8 233 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.61□□□□□ -0.87
VPS29-203ENST00000546588 BLIDQ8IZY5 108 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 SAMD3Q8N6K7 520 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 GPT2Q8TD30 523 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 EDEM1Q92611 657 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 CHAMP1Q96JM3 812 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 WRNIP1Q96S55 665 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 BRMS1Q9HCU9 246 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 FEM1BQ9UK73 627 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 PNMA2Q9UL42 364 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 KCNJ14Q9UNX9 436 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 AFG3L2Q9Y4W6 797 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 SNCAIPQ9Y6H5 919 aa9.61□□□□□ -0.87
VPS29-203ENST00000546588 FRMPD2Q68DX3 1309 aaPredicted RBP9.6□□□□□ -0.87
VPS29-203ENST00000546588 CLGNO14967 610 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 PRPF40AO75400 957 aaKnown RBP9.6□□□□□ -0.87
VPS29-203ENST00000546588 BMP15O95972 392 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 ERCC5P28715 1186 aaPredicted RBP9.6□□□□□ -0.87
VPS29-203ENST00000546588 BACE1P56817 501 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 FKBP1BP68106 108 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 TEAD4Q15561 434 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 CDC37Q16543 378 aaPredicted RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms