RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 PABPC4Q13310 644 aaKnown RBP eCLIP16.09■□□□□ 0.17
HOXC11-202ENST00000546378 PAPD7Q5XG87 772 aaKnown RBP16.09■□□□□ 0.17
HOXC11-202ENST00000546378 KRT79Q5XKE5 535 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 FAM114A1Q8IWE2 563 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 TSG101Q99816 390 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 LRRC4CQ9HCJ2 640 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L15C9J2P7 530 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L13C9JLJ4 530 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L11C9JVI0 530 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L18D6R9N7 530 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L22D6RA61 530 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L17D6RBQ6 530 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L19D6RCP7 530 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L20D6RJB6 530 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 SLC9A1P19634 815 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 SCP2P22307 547 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 GUCY2CP25092 1073 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 MAGOHP61326 146 aaKnown RBP16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L24Q0WX57 530 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 USP17L6PQ6QN14 398 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 CAPN12Q6ZSI9 719 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 REXO1Q8N1G1 1221 aaKnown RBP16.09■□□□□ 0.17
HOXC11-202ENST00000546378 MAGOHBQ96A72 148 aaKnown RBP16.09■□□□□ 0.17
HOXC11-202ENST00000546378 PDS5AQ29RF7 1337 aaKnown RBP16.09■□□□□ 0.17
HOXC11-202ENST00000546378 MYH2Q9UKX2 1941 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 GJC1P36383 396 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 CACNB3P54284 484 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 PPP1R7Q15435 360 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 MIIPQ5JXC2 388 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 FAM83BQ5T0W9 1011 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 FBXO33Q7Z6M2 555 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 GIMAP8Q8ND71 665 aaPredicted RBP16.09■□□□□ 0.17
HOXC11-202ENST00000546378 ZNF507Q8TCN5 953 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 DYDC1Q8WWB3 177 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 SPIRE2Q8WWL2 714 aa16.09■□□□□ 0.17
HOXC11-202ENST00000546378 ZNF512BQ96KM6 892 aaPredicted RBP16.09■□□□□ 0.17
HOXC11-202ENST00000546378 GCOM1H8Y6P7 765 aaPredicted RBP16.08■□□□□ 0.17
HOXC11-202ENST00000546378 COL4A1P02462 1669 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 MYZAPP0CAP1 466 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 TCP10Q12799 353 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 RPS6KA1Q15418 735 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 ZFYVE27Q5T4F4 411 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 TTBK2Q6IQ55 1244 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 AADACL2Q6P093 401 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 CNNM4Q6P4Q7 775 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 TEX11Q8IYF3 940 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 LARP4BQ92615 738 aaKnown RBP16.08■□□□□ 0.17
HOXC11-202ENST00000546378 N4BP2L2Q92802 583 aaPredicted RBP16.08■□□□□ 0.17
HOXC11-202ENST00000546378 MYCBPQ99417 103 aaPredicted RBP16.08■□□□□ 0.17
HOXC11-202ENST00000546378 EYA3Q99504 573 aa16.08■□□□□ 0.17
HOXC11-202ENST00000546378 ITIH6Q6UXX5 1313 aa16.08■□□□□ 0.16
HOXC11-202ENST00000546378 GTF2IP78347 998 aa16.08■□□□□ 0.16
HOXC11-202ENST00000546378 KCNV1Q6PIU1 500 aa16.08■□□□□ 0.16
HOXC11-202ENST00000546378 NEK8Q86SG6 692 aa16.08■□□□□ 0.16
HOXC11-202ENST00000546378 ZSCAN29Q8IWY8 852 aaPredicted RBP16.08■□□□□ 0.16
HOXC11-202ENST00000546378 ZNF473Q8WTR7 871 aaKnown RBP16.08■□□□□ 0.16
HOXC11-202ENST00000546378 THAP9Q9H5L6 903 aa16.08■□□□□ 0.16
HOXC11-202ENST00000546378 POTEB3A0JP26 581 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 POTECB2RU33 542 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 LDHBP07195 334 aaKnown RBP16.07■□□□□ 0.16
HOXC11-202ENST00000546378 AMPD3Q01432 767 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 SPRED3Q2MJR0 410 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 POTEBQ6S5H4 581 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 ZNF804AQ7Z570 1209 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 TAB3Q8N5C8 712 aaPredicted RBP16.07■□□□□ 0.16
HOXC11-202ENST00000546378 ANKRD42Q8N9B4 389 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 NSUN4Q96CB9 384 aaKnown RBP16.07■□□□□ 0.16
HOXC11-202ENST00000546378 ZC3H12CQ9C0D7 883 aaKnown RBP16.07■□□□□ 0.16
HOXC11-202ENST00000546378 POLLQ9UGP5 575 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 PPEF1O14829 653 aaPredicted RBP16.07■□□□□ 0.16
HOXC11-202ENST00000546378 TTI1O43156 1089 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 YY1P25490 414 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 PLTPP55058 493 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 PAK2Q13177 524 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 MTM1Q13496 603 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 SLC35G1Q2M3R5 365 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 FAM182AQ5T1J6 154 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 KLHDC7AQ5VTJ3 777 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 MXD3Q9BW11 206 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 C6orf50Q9HD87 102 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 FBXL5Q9UKA1 691 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 THSD7AQ9UPZ6 1657 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 GFPT2O94808 682 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 TCP1P17987 556 aaKnown RBP16.07■□□□□ 0.16
HOXC11-202ENST00000546378 ADAM9Q13443 819 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 TUBB2AQ13885 445 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 QPCTQ16769 361 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 TMEM266Q2M3C6 531 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 RCSD1Q6JBY9 416 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 NLRP14Q86W24 1093 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 AENQ8WTP8 325 aaKnown RBP16.07■□□□□ 0.16
HOXC11-202ENST00000546378 TUBB2BQ9BVA1 445 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 TMOD4Q9NZQ9 345 aa16.07■□□□□ 0.16
HOXC11-202ENST00000546378 GOLGA8KD6RF30 607 aa16.06■□□□□ 0.16
HOXC11-202ENST00000546378 GBP2P32456 591 aaPredicted RBP16.06■□□□□ 0.16
HOXC11-202ENST00000546378 SCNN1DP51172 638 aa16.06■□□□□ 0.16
HOXC11-202ENST00000546378 TRIP13Q15645 432 aaPredicted RBP16.06■□□□□ 0.16
HOXC11-202ENST00000546378 ZNF746Q6NUN9 644 aaPredicted RBP16.06■□□□□ 0.16
HOXC11-202ENST00000546378 PEX26Q7Z412 305 aa16.06■□□□□ 0.16
HOXC11-202ENST00000546378 TBC1D1Q86TI0 1168 aaPredicted RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms