RNA–Protein interactions for RNA: ENST00000545920.1

SNHG1-225, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-225	ENST00000545920	SHTN1	A0MZ66	631 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	GOLGA6B	A6NDN3	693 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	BTNL10	A8MVZ5	291 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	RBAK-RBAKDN	I3L0D1	243 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	WNT7A	O00755	349 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	TERT	O14746	1132 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	LDHC	P07864	332 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	OR52Z1	P0C646	297 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	ZNF16	P17020	682 aa	Predicted RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	SMPD1	P17405	629 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	MCM7	P33993	719 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	HERVK_113	P62684	666 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	PDIA5	Q14554	519 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	ECM1	Q16610	540 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	IFI16	Q16666	785 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	MAN2A1	Q16706	1144 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	VWA3B	Q502W6	1294 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	NAALADL2	Q58DX5	795 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	EARS2	Q5JPH6	523 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	INTS5	Q6P9B9	1019 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	MICALCL	Q6ZW33	695 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	FMNL3	Q8IVF7	1028 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	CD302	Q8IX05	232 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	SYNE4	Q8N205	404 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	MREG	Q8N565	214 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	MIGA1	Q8NAN2	632 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	NOA1	Q8NC60	698 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	RASSF8	Q8NHQ8	419 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	SNIP1	Q8TAD8	396 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	NSUN4	Q96CB9	384 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	SHISA4	Q96DD7	197 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	SLC10A4	Q96EP9	437 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	RUFY1	Q96T51	708 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	TSG101	Q99816	390 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	SH3GL2	Q99962	352 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	PAGR1	Q9BTK6	254 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	NOC4L	Q9BVI4	516 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	TRIM9	Q9C026	710 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	ZMYND12	Q9H0C1	365 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	GLT8D2	Q9H1C3	349 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	SH2D4A	Q9H788	454 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	ZSWIM4	Q9H7M6	989 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	C6orf50	Q9HD87	102 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	DCP1A	Q9NPI6	582 aa	Predicted RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	INCENP	Q9NQS7	918 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	DAAM1	Q9Y4D1	1078 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	C10orf71	Q711Q0	1435 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	COL1A1	P02452	1464 aa	Predicted RBP	7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	NHSL1	Q5SYE7	1610 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	ZNF831	Q5JPB2	1677 aa		7.16	□□□□□ -1.26
SNHG1-225	ENST00000545920	COL14A1	Q05707	1796 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	GOLGA6C	A6NDK9	693 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	TSPY2	A6NKD2	308 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	LRRIQ3	A6PVS8	624 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	UBE2Q2L	H0YL09	131 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	EBAG9	O00559	213 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	ZBTB24	O43167	697 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	HSF2BP	O75031	334 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	BAG3	O95817	575 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	SYF2	O95926	243 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	ATP1A1	P05023	1023 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	GOLGA6D	P0CG33	693 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	IDE	P14735	1019 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	MTIF2	P46199	727 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	PAK2	Q13177	524 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	NONO	Q15233	471 aa	Known RBP eCLIP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	CLUL1	Q15846	466 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	IL17A	Q16552	155 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	TMEM266	Q2M3C6	531 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	TTC31	Q49AM3	519 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	CFAP221	Q4G0U5	840 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	LCE2C	Q5TA81	110 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	MCTP2	Q6DN12	878 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	LRRC31	Q6UY01	552 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	C15orf52	Q6ZUT6	534 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	UNC13D	Q70J99	1090 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	SV2B	Q7L1I2	683 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	YTHDF3	Q7Z739	585 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	RPAIN	Q86UA6	219 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	CABP7	Q86V35	215 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	TAX1BP1	Q86VP1	789 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	SUGP1	Q8IWZ8	645 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	IFT20	Q8IY31	132 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	SMYD4	Q8IYR2	804 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	ARFGAP2	Q8N6H7	521 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	WDR66	Q8TBY9	1149 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	WHAMM	Q8TF30	809 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	SDR42E1	Q8WUS8	393 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	DDX17	Q92841	729 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	COL26A1	Q96A83	441 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	FAM84B	Q96KN1	310 aa	Predicted RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	CNOT6L	Q96LI5	555 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	CEP63	Q96MT8	703 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	NOX5	Q96PH1	765 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	SLC4A9	Q96Q91	983 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	CHP1	Q99653	195 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	DUSP9	Q99956	384 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	SELENOO	Q9BVL4	669 aa		7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	IFIH1	Q9BYX4	1025 aa	Known RBP	7.15	□□□□□ -1.26
SNHG1-225	ENST00000545920	EPC1	Q9H2F5	836 aa		7.15	□□□□□ -1.26

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms