RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CCDC88AQ3V6T2 1871 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 KCNK3O14649 394 aa16.56■□□□□ 0.24
USP28-214ENST00000545540 MYBP10242 640 aa16.56■□□□□ 0.24
USP28-214ENST00000545540 SHMT1P34896 483 aa16.56■□□□□ 0.24
USP28-214ENST00000545540 TBC1D10BQ4KMP7 808 aaPredicted RBP16.56■□□□□ 0.24
USP28-214ENST00000545540 TTMPQ5BVD1 217 aa16.56■□□□□ 0.24
USP28-214ENST00000545540 NAA35Q5VZE5 725 aa16.56■□□□□ 0.24
USP28-214ENST00000545540 TNRC6CQ9HCJ0 1690 aaKnown RBP16.56■□□□□ 0.24
USP28-214ENST00000545540 ASTE1Q2TB18 679 aaPredicted RBP16.56■□□□□ 0.24
USP28-214ENST00000545540 ZIM3Q96PE6 472 aa16.56■□□□□ 0.24
USP28-214ENST00000545540 RUFY1Q96T51 708 aa16.56■□□□□ 0.24
USP28-214ENST00000545540 AJAP1Q9UKB5 411 aaPredicted RBP16.56■□□□□ 0.24
USP28-214ENST00000545540 TARSL2A2RTX5 802 aaKnown RBP16.55■□□□□ 0.24
USP28-214ENST00000545540 BACH1O14867 736 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 GYS1P13807 737 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 IRAK1P51617 712 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 TUBB4BP68371 445 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 PTK2Q05397 1052 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 LRRC63Q05C16 580 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 RC3H1Q5TC82 1133 aaKnown RBP16.55■□□□□ 0.24
USP28-214ENST00000545540 PLCD3Q8N3E9 789 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 BCAS4Q8TDM0 211 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 RIC8AQ9NPQ8 531 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 CYP11B2P19099 503 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 AARSP49588 968 aaKnown RBP eCLIP16.55■□□□□ 0.24
USP28-214ENST00000545540 HLTFQ14527 1009 aaKnown RBP eCLIP16.55■□□□□ 0.24
USP28-214ENST00000545540 FIGNQ5HY92 759 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 FNBP4Q8N3X1 1017 aaPredicted RBP16.55■□□□□ 0.24
USP28-214ENST00000545540 CHORDC1Q9UHD1 332 aaPredicted RBP16.55■□□□□ 0.24
USP28-214ENST00000545540 MRPL12P52815 198 aaKnown RBP16.55■□□□□ 0.24
USP28-214ENST00000545540 TMEM119Q4V9L6 283 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 CDC42EP5Q6NZY7 148 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 MAEAQ7L5Y9 396 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 SFR1Q86XK3 245 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 RDH13Q8NBN7 331 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 SPAG5Q96R06 1193 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 USP21Q9UK80 565 aa16.55■□□□□ 0.24
USP28-214ENST00000545540 EEF2P13639 858 aaKnown RBP16.54■□□□□ 0.24
USP28-214ENST00000545540 IL1R1P14778 569 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 ATP2B4P23634 1241 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 HNRNPH3P31942 346 aaKnown RBP16.54■□□□□ 0.24
USP28-214ENST00000545540 COPB2P35606 906 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 LIG3P49916 1009 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 DDR1Q08345 913 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 LLGL1Q15334 1064 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 CATSPER3Q86XQ3 398 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 TRIM31Q9BZY9 425 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 LAMB1P07942 1786 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 ZBTB5O15062 677 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 PLCG2P16885 1265 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 TCP1P17987 556 aaKnown RBP16.54■□□□□ 0.24
USP28-214ENST00000545540 HPDP32754 393 aaPredicted RBP16.54■□□□□ 0.24
USP28-214ENST00000545540 SEPT2Q15019 361 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 ZCWPW2Q504Y3 356 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 ASPRV1Q53RT3 343 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 MMGT1Q8N4V1 131 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 ZC3H12CQ9C0D7 883 aaKnown RBP16.54■□□□□ 0.24
USP28-214ENST00000545540 COL22A1Q8NFW1 1626 aaPredicted RBP16.54■□□□□ 0.24
USP28-214ENST00000545540 GUCY1A3Q02108 690 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 PDIA5Q14554 519 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 IQCEQ6IPM2 695 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 CERS3Q8IU89 383 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 RPGRIP1Q96KN7 1286 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 SH2D3AQ9BRG2 576 aa16.54■□□□□ 0.24
USP28-214ENST00000545540 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.54■□□□□ 0.24
USP28-214ENST00000545540 DDTLA6NHG4 134 aaPredicted RBP16.53■□□□□ 0.24
USP28-214ENST00000545540 CEP104O60308 925 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 FGFR1OPO95684 399 aaKnown RBP16.53■□□□□ 0.24
USP28-214ENST00000545540 TUBBP07437 444 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 MCM3P25205 808 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 CDK17Q00537 523 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 GABPAQ06546 454 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 MKRN4PQ13434 485 aaPredicted RBP16.53■□□□□ 0.24
USP28-214ENST00000545540 CFAP221Q4G0U5 840 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 ZNF571Q7Z3V5 609 aaPredicted RBP16.53■□□□□ 0.24
USP28-214ENST00000545540 BHMT2Q9H2M3 363 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 DNAJC18Q9H819 358 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 VIPAS39Q9H9C1 493 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 ATP6V0A2Q9Y487 856 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 DDX60LQ5H9U9 1706 aaKnown RBP16.53■□□□□ 0.24
USP28-214ENST00000545540 IVLP07476 585 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 ZC2HC1CQ53FD0 456 aaPredicted RBP16.53■□□□□ 0.24
USP28-214ENST00000545540 CCDC65Q8IXS2 484 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 RBM17Q96I25 401 aaKnown RBP16.53■□□□□ 0.24
USP28-214ENST00000545540 CAPS2Q9BXY5 557 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 PKD2L1Q9P0L9 805 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 BCCIPQ9P287 314 aaKnown RBP eCLIP16.53■□□□□ 0.24
USP28-214ENST00000545540 HDAC9Q9UKV0 1011 aa16.53■□□□□ 0.24
USP28-214ENST00000545540 GRID2IPA4D2P6 1211 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 RAD51CO43502 376 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 CDC37Q16543 378 aaPredicted RBP16.52■□□□□ 0.24
USP28-214ENST00000545540 CASKIN2Q8WXE0 1202 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 REEP2Q9BRK0 252 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 ANO3Q9BYT9 981 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 MYH1P12882 1939 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 FAM86B1E9PN63 330 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 SERPING1P05155 500 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 FAM86B2P0C5J1 330 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 CTTNQ14247 550 aaKnown RBP16.52■□□□□ 0.24
USP28-214ENST00000545540 ASIC2Q16515 512 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms