RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	MSC	O60682	206 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	PSAP	P07602	524 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	RARB	P10826	455 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	SMPD1	P17405	629 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	HOXD11	P31277	338 aa	Predicted RBP	13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	MCM4	P33991	863 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	SP2	Q02086	613 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	TRIM32	Q13049	653 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	ZRSR1	Q15695	479 aa	Known RBP	13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	MIS18BP1	Q6P0N0	1132 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	CCDC62	Q6P9F0	684 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	CABP7	Q86V35	215 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	IGSF22	Q8N9C0	903 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	NEK9	Q8TD19	979 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	MRPS27	Q92552	414 aa	Known RBP	13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	COPS5	Q92905	334 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	PYM1	Q9BRP8	204 aa	Known RBP	13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	DISC1	Q9NRI5	854 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	VAV3	Q9UKW4	847 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658	ARID2	Q68CP9	1835 aa		13.36	□□□□□ -0.27
DDB1-223	ENST00000543658		A0A1W2PQ27	194 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658		A0A1W2PQ64	194 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658		A0A1W2PQD8	194 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	BACH1	O14867	736 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	DHX15	O43143	795 aa	Known RBP	13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	DKC1	O60832	514 aa	Known RBP eCLIP	13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	IGHA2	P01877	340 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	CCT6A	P40227	531 aa	Known RBP	13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	GRIN1	Q05586	938 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	EPHA7	Q15375	998 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	SPECC1	Q5M775	1068 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	FAM160B1	Q5W0V3	765 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	FSIP1	Q8NA03	581 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	SH3TC2	Q8TF17	1288 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	SEPT1	Q8WYJ6	367 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	SYMPK	Q92797	1274 aa	Known RBP	13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	CCDC43	Q96MW1	224 aa	Known RBP	13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	NT5C3A	Q9H0P0	336 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	AZI2	Q9H6S1	392 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658		Q9Y3F1	56 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	PCDHA10	Q9Y5I2	948 aa		13.35	□□□□□ -0.27
DDB1-223	ENST00000543658	MYH11	P35749	1972 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	DYNC1LI2	O43237	492 aa	Predicted RBP	13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	SLC26A4	O43511	780 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	ZEB2	O60315	1214 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	DUSP11	O75319	330 aa	Known RBP	13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	SUPT20HL2	P0C7V6	817 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	CMA1	P23946	247 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	CCND3	P30281	292 aa	Predicted RBP	13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	CPT1A	P50416	773 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	ACTR2	P61160	394 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	ARHGAP1	Q07960	439 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	SPIRE1	Q08AE8	756 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	IL17A	Q16552	155 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	GJC2	Q5T442	439 aa	Predicted RBP	13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	RESP18	Q5W5W9	173 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	TRPV1	Q8NER1	839 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	PPTC7	Q8NI37	304 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	ATP6V0A1	Q93050	837 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	EMID1	Q96A84	441 aa	Predicted RBP	13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	CCDC34	Q96HJ3	373 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	EIF2AK1	Q9BQI3	630 aa	Known RBP	13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	TUFT1	Q9NNX1	390 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	PRDM10	Q9NQV6	1147 aa		13.34	□□□□□ -0.27
DDB1-223	ENST00000543658	DDX20	Q9UHI6	824 aa	Known RBP	13.34	□□□□□ -0.27
DDB1-223	ENST00000543658		A0A1B0GVL5	298 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	PP2D1	A8MPX8	630 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	EML1	O00423	815 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	MBD3	O95983	291 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	MYCN	P04198	464 aa	Predicted RBP	13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	P4HB	P07237	508 aa	Known RBP	13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	C6orf222	P0C671	652 aa	Predicted RBP	13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	TCF7	P36402	384 aa	Predicted RBP	13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	CYP4A11	Q02928	519 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	DGKD	Q16760	1214 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	UTP14C	Q5TAP6	766 aa	Known RBP	13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	MAP3K21	Q5TCX8	1036 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	SHC4	Q6S5L8	630 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	CKAP2L	Q8IYA6	745 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	DYDC2	Q96IM9	177 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	EPSTI1	Q96J88	318 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	GPR20	Q99678	358 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	CCSER1	Q9C0I3	900 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	XPNPEP3	Q9NQH7	507 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	ZNF302	Q9NR11	478 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	ZNF215	Q9UL58	517 aa	Predicted RBP	13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	GNE	Q9Y223	722 aa	Known RBP	13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	PCNT	O95613	3336 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	CEP350	Q5VT06	3117 aa		13.33	□□□□□ -0.28
DDB1-223	ENST00000543658	GADD45B	O75293	160 aa	Predicted RBP	13.32	□□□□□ -0.28
DDB1-223	ENST00000543658	CCNE2	O96020	404 aa		13.32	□□□□□ -0.28
DDB1-223	ENST00000543658	MMP3	P08254	477 aa		13.32	□□□□□ -0.28
DDB1-223	ENST00000543658	PFKFB1	P16118	471 aa		13.32	□□□□□ -0.28
DDB1-223	ENST00000543658	MUT	P22033	750 aa		13.32	□□□□□ -0.28
DDB1-223	ENST00000543658	RPA1	P27694	616 aa		13.32	□□□□□ -0.28
DDB1-223	ENST00000543658	CDC25A	P30304	524 aa		13.32	□□□□□ -0.28
DDB1-223	ENST00000543658	STAT6	P42226	847 aa		13.32	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms