RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 FAM160B2Q86V87 743 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 EFHBQ8N7U6 833 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 CYP2W1Q8TAV3 490 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 MORC4Q8TE76 937 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 FRAT1Q92837 279 aaPredicted RBP5.65□□□□□ -1.5
LIMS1-214ENST00000542845 OSBPL7Q9BZF2 842 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 TLE6Q9H808 572 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 IL1RAPL2Q9NP60 686 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 PLAGL2Q9UPG8 496 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 TNNQ9UQP3 1299 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 R4GN57 208 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 C5orf67F2Z3F1 127 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 PI15O43692 258 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 GLP2RO95838 553 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 MMP1P03956 469 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 APPP05067 770 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 ITGB1P05556 798 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 ASGR2P07307 311 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 TSPY3P0CV98 308 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 TSPY8P0CW00 308 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 ARP10275 920 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 NDUFV2P19404 249 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 SLC16A2P36021 539 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 RBL2Q08999 1139 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 MTMR3Q13615 1198 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 CAMK1Q14012 370 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 COL9A3Q14050 684 aaPredicted RBP5.64□□□□□ -1.51
LIMS1-214ENST00000542845 DGKDQ16760 1214 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 QPCTQ16769 361 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 CCDC96Q2M329 555 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 TRIM71Q2Q1W2 868 aaKnown RBP5.64□□□□□ -1.51
LIMS1-214ENST00000542845 PAN2Q504Q3 1202 aaKnown RBP5.64□□□□□ -1.51
LIMS1-214ENST00000542845 SPOUT1Q5T280 376 aaKnown RBP5.64□□□□□ -1.51
LIMS1-214ENST00000542845 TMED8Q6PL24 325 aaPredicted RBP5.64□□□□□ -1.51
LIMS1-214ENST00000542845 RNF207Q6ZRF8 634 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 PACS2Q86VP3 889 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 SESTD1Q86VW0 696 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 RPAP2Q8IXW5 612 aaPredicted RBP5.64□□□□□ -1.51
LIMS1-214ENST00000542845 TTC13Q8NBP0 860 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 POF1BQ8WVV4 589 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 RIN2Q8WYP3 895 aaPredicted RBP5.64□□□□□ -1.51
LIMS1-214ENST00000542845 GLMNQ92990 594 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 MKL1Q969V6 931 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 MTMR4Q9NYA4 1195 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 PRR12Q9ULL5 1215 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 SORCS3Q9UPU3 1222 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 RWDD3Q9Y3V2 267 aa5.64□□□□□ -1.51
LIMS1-214ENST00000542845 FAM186AA6NE01 2351 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 KIAA1671Q9BY89 1806 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 PLXNA4Q9HCM2 1894 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 C17orf102A2RUQ5 167 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 DCDC2BA2VCK2 349 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 B4DLN1 442 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 PPP1R3GB7ZBB8 358 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 SPTLC1O15269 473 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 ADD2P35612 726 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 TECP42680 631 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 MRPL12P52815 198 aaKnown RBP5.63□□□□□ -1.51
LIMS1-214ENST00000542845 ARHGAP1Q07960 439 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 SLFN5Q08AF3 891 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 TTBK2Q6IQ55 1244 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 RCSD1Q6JBY9 416 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 RASGRP2Q7LDG7 609 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 UBALD2Q8IYN6 164 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 KLHL23Q8NBE8 558 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 GMCL1P1Q8NEA9 526 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 SPPL3Q8TCT6 385 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 SSH3Q8TE77 659 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 ATP6V0A1Q93050 837 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 COL26A1Q96A83 441 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 NEK1Q96PY6 1258 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 HAUS7Q99871 368 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 KATNAL1Q9BW62 490 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.63□□□□□ -1.51
LIMS1-214ENST00000542845 BOLA2Q9H3K6 86 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 PAG1Q9NWQ8 432 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 ARPP21Q9UBL0 812 aaPredicted RBP5.63□□□□□ -1.51
LIMS1-214ENST00000542845 CDH22Q9UJ99 828 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 STX8Q9UNK0 236 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 EXOC6BQ9Y2D4 811 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 NR2E1Q9Y466 385 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 GREB1LQ9C091 1923 aaPredicted RBP5.63□□□□□ -1.51
LIMS1-214ENST00000542845 ADGRA3Q8IWK6 1321 aa5.63□□□□□ -1.51
LIMS1-214ENST00000542845 IGKV6D-41A0A0C4DH26 115 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 POM121CA8CG34 1229 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 SMAPO00193 183 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 ENPP3O14638 875 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 TREHO43280 583 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 ICAM1P05362 532 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 IFIT2P09913 472 aaKnown RBP5.62□□□□□ -1.51
LIMS1-214ENST00000542845 ATF7P17544 494 aaPredicted RBP5.62□□□□□ -1.51
LIMS1-214ENST00000542845 RFX1P22670 979 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 CA8P35219 290 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 TDO2P48775 406 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 CLCN5P51795 746 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 RARSP54136 660 aaKnown RBP5.62□□□□□ -1.51
LIMS1-214ENST00000542845 RPS6P62753 249 aaKnown RBP5.62□□□□□ -1.51
LIMS1-214ENST00000542845 TFAP4Q01664 338 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 USH1GQ495M9 461 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 DTWD2Q8NBA8 298 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms