RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 DBR1Q9UK59 544 aaKnown RBP11.14□□□□□ -0.63
YBX3-211ENST00000541351 USP18Q9UMW8 372 aa11.14□□□□□ -0.63
YBX3-211ENST00000541351 DUSP12Q9UNI6 340 aa11.14□□□□□ -0.63
YBX3-211ENST00000541351 STX8Q9UNK0 236 aa11.14□□□□□ -0.63
YBX3-211ENST00000541351 GPR179Q6PRD1 2367 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 ENPP3O14638 875 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 PPFIA3O75145 1194 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 ASGR2P07307 311 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 SP9P0CG40 484 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 HOXD8P13378 290 aaPredicted RBP11.13□□□□□ -0.63
YBX3-211ENST00000541351 ATP8B2P98198 1209 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 COL9A3Q14050 684 aaPredicted RBP11.13□□□□□ -0.63
YBX3-211ENST00000541351 PPM1JQ5JR12 505 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 FAM26DQ5JW98 314 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 XRRA1Q6P2D8 792 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 SYCE2Q6PIF2 218 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 C1orf210Q8IVY1 113 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 RGS22Q8NE09 1264 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 DCAF4Q8WV16 495 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 POMKQ9H5K3 350 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 PAG1Q9NWQ8 432 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 WNT16Q9UBV4 365 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 DDX41Q9UJV9 622 aaKnown RBP11.13□□□□□ -0.63
YBX3-211ENST00000541351 LRFN2Q9ULH4 789 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 LZTS1Q9Y250 596 aa11.13□□□□□ -0.63
YBX3-211ENST00000541351 H3BRB1 525 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 EIF3JO75822 258 aaKnown RBP11.12□□□□□ -0.63
YBX3-211ENST00000541351 NPR3P17342 541 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 SNAP25P60880 206 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 SYDE2Q5VT97 1194 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 TAF2Q6P1X5 1199 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 OTOP3Q7RTS5 596 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 THNSL1Q8IYQ7 743 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 STK11IPQ8N1F8 1099 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 SUMF1Q8NBK3 374 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 TMEM87AQ8NBN3 555 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 NETO1Q8TDF5 533 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 ATRIPQ8WXE1 791 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 RIN2Q8WYP3 895 aaPredicted RBP11.12□□□□□ -0.63
YBX3-211ENST00000541351 SPATA33Q96N06 139 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 APOL5Q9BWW9 433 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 TUT1Q9H6E5 874 aaKnown RBP11.12□□□□□ -0.63
YBX3-211ENST00000541351 ERVK-5Q9HDB9 667 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 ENTPD7Q9NQZ7 604 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 IGSF9Q9P2J2 1179 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 GMEB2Q9UKD1 530 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 RALYQ9UKM9 306 aaKnown RBP11.12□□□□□ -0.63
YBX3-211ENST00000541351 MYO10Q9HD67 2058 aa11.12□□□□□ -0.63
YBX3-211ENST00000541351 CCDC171Q6TFL3 1326 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 WDR19Q8NEZ3 1342 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 TREHO43280 583 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 FOXD2O60548 495 aaPredicted RBP11.11□□□□□ -0.63
YBX3-211ENST00000541351 FGF18O76093 207 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 EOMESO95936 686 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 SMIM10L2AP0DMW4 78 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 SMIM10L2BP0DMW5 78 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 GHRP10912 638 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 GNAT2P19087 354 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 HOXC8P31273 242 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 TDO2P48775 406 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 KCNC3Q14003 757 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 ZNF528Q3MIS6 628 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 CCDC184Q52MB2 194 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 LLGL2Q6P1M3 1020 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 CLASRPQ8N2M8 674 aaKnown RBP11.11□□□□□ -0.63
YBX3-211ENST00000541351 VN1R2Q8NFZ6 395 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 USP26Q9BXU7 913 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 DZANK1Q9NVP4 752 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 TMEM260Q9NX78 707 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 ZNF215Q9UL58 517 aaPredicted RBP11.11□□□□□ -0.63
YBX3-211ENST00000541351 PCDHGA2Q9Y5H1 932 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 LCTP09848 1927 aa11.11□□□□□ -0.63
YBX3-211ENST00000541351 PRDM1O75626 825 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 BCAR3O75815 825 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 IFIT2P09913 472 aaKnown RBP11.1□□□□□ -0.63
YBX3-211ENST00000541351 TGFB3P10600 412 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 TFAP4Q01664 338 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 KRT17Q04695 432 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 PAN2Q504Q3 1202 aaKnown RBP11.1□□□□□ -0.63
YBX3-211ENST00000541351 KIAA1841Q6NSI8 718 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 BTNL9Q6UXG8 535 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 TSHZ1Q6ZSZ6 1077 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 RASGRP2Q7LDG7 609 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 MCF2L2Q86YR7 1114 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 CLEC4DQ8WXI8 215 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 NACAP1Q9BZK3 213 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 SMOC2Q9H3U7 446 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 RNPEPQ9H4A4 650 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 SIT1Q9Y3P8 196 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 SQORQ9Y6N5 450 aa11.1□□□□□ -0.63
YBX3-211ENST00000541351 NOP56O00567 594 aaKnown RBP11.09□□□□□ -0.63
YBX3-211ENST00000541351 SLC30A4O14863 429 aa11.09□□□□□ -0.63
YBX3-211ENST00000541351 FSCN2O14926 492 aa11.09□□□□□ -0.63
YBX3-211ENST00000541351 PPM1AP35813 382 aa11.09□□□□□ -0.63
YBX3-211ENST00000541351 RBM10P98175 930 aaKnown RBP11.09□□□□□ -0.63
YBX3-211ENST00000541351 ARHGEF16Q5VV41 709 aa11.09□□□□□ -0.63
YBX3-211ENST00000541351 MYSM1Q5VVJ2 828 aa11.09□□□□□ -0.63
YBX3-211ENST00000541351 PLPP4Q5VZY2 271 aa11.09□□□□□ -0.63
YBX3-211ENST00000541351 PHLDB3Q6NSJ2 640 aa11.09□□□□□ -0.63
YBX3-211ENST00000541351 CCDC149Q6ZUS6 474 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms