RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 CPZQ66K79 652 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 PLEKHH3Q7Z736 793 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 CKAP2LQ8IYA6 745 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 KLHL36Q8N4N3 616 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 TTC9BQ8N6N2 239 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 PTPN18Q99952 460 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 C1QTNF3Q9BXJ4 246 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 PDGFDQ9GZP0 370 aaPredicted RBP5.65□□□□□ -1.5
VPS13A-213ENST00000539950 MYRFQ9Y2G1 1151 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 TCRBV5S4A2TA0A5A2 114 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 CCDC85CA6NKD9 419 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 FAM47E-STBD1D6RA91 191 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 ACOT7O00154 380 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 PDPK1O15530 556 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 GLRBP48167 497 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 PFKPQ01813 784 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 NFATC3Q12968 1075 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 SURF1Q15526 300 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 SKIDA1Q1XH10 827 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 FOXB2Q5VYV0 432 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 KCTD1Q719H9 257 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 SH3RF2Q8TEC5 729 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 CD244Q9BZW8 370 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 PFDN2Q9UHV9 154 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 ZFP69BQ9UJL9 534 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 ZDHHC9Q9Y397 364 aa5.64□□□□□ -1.51
VPS13A-213ENST00000539950 E9PSI1 815 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 U2SURPO15042 1029 aaKnown RBP5.63□□□□□ -1.51
VPS13A-213ENST00000539950 GPR42O15529 346 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 B4GALT4O60513 344 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 DIAPH1O60610 1272 aaKnown RBP5.63□□□□□ -1.51
VPS13A-213ENST00000539950 KNG1P01042 644 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 EPHB4P54760 987 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 PPP2CBP62714 309 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 PPP2CAP67775 309 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 RASGRF1Q13972 1273 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 SMAD2Q15796 467 aaKnown RBP5.63□□□□□ -1.51
VPS13A-213ENST00000539950 MTERF2Q49AM1 385 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 FAM209AQ5JX71 171 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 ARHGEF18Q6ZSZ5 1173 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 STPG3Q8N7X2 389 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 CHST13Q8NET6 341 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 ALG1Q9BT22 464 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 KCND1Q9NSA2 647 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 ADAM29Q9UKF5 820 aa5.63□□□□□ -1.51
VPS13A-213ENST00000539950 NPEPPSL1A6NEC2 478 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 ZNF839A8K0R7 811 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 ENO2P09104 434 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-213ENST00000539950 C6orf222P0C671 652 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-213ENST00000539950 TNFRSF1AP19438 455 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 SSRP1Q08945 709 aaKnown RBP5.62□□□□□ -1.51
VPS13A-213ENST00000539950 ICAM4Q14773 271 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 DPH6Q7L8W6 267 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 SCUBE1Q8IWY4 988 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 CDC6Q99741 560 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 BARX1Q9HBU1 254 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-213ENST00000539950 JADE2Q9NQC1 790 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 ARHGAP20Q9P2F6 1191 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 NUB1Q9Y5A7 615 aa5.62□□□□□ -1.51
VPS13A-213ENST00000539950 TRBV23-1A0A0A0MS06 115 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 C1QTNF3-AMACRE9PGA6 284 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 MATN3O15232 486 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 FBXO21O94952 628 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 IL18BPO95998 194 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 PAK1Q13153 545 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 Q6ZUG5 572 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 ZBTB38Q8NAP3 1195 aaPredicted RBP5.61□□□□□ -1.51
VPS13A-213ENST00000539950 PTPRN2Q92932 1015 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 DVL3Q92997 716 aaPredicted RBP5.61□□□□□ -1.51
VPS13A-213ENST00000539950 TANGO6Q9C0B7 1094 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 CCDC113Q9H0I3 377 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 MEGF9Q9H1U4 602 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 CD248Q9HCU0 757 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 PPP1R1BQ9UD71 204 aaPredicted RBP5.61□□□□□ -1.51
VPS13A-213ENST00000539950 PCDHA8Q9Y5H6 950 aa5.61□□□□□ -1.51
VPS13A-213ENST00000539950 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-213ENST00000539950 FAM90A27PA6NNH2 459 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 AQP7O14520 342 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 CHGBP05060 677 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 FAM153BP0C7A2 387 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 PYGMP11217 842 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 SUMO1P63165 101 aaKnown RBP5.6□□□□□ -1.51
VPS13A-213ENST00000539950 CDSNQ15517 529 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 SLFN13Q68D06 897 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 MAMDC2Q7Z304 686 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-213ENST00000539950 GPR155Q7Z3F1 870 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 MTDHQ86UE4 582 aaKnown RBP5.6□□□□□ -1.51
VPS13A-213ENST00000539950 CIR1Q86X95 450 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-213ENST00000539950 DNERQ8NFT8 737 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 PCDH19Q8TAB3 1148 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 EXOC2Q96KP1 924 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 TACO1Q9BSH4 297 aaKnown RBP5.6□□□□□ -1.51
VPS13A-213ENST00000539950 TMPRSS5Q9H3S3 457 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 SLC39A2Q9NP94 309 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 CBLCQ9ULV8 474 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 SRPK3Q9UPE1 567 aa5.6□□□□□ -1.51
VPS13A-213ENST00000539950 WNT9AO14904 365 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 CNOT4O95628 575 aaKnown RBP5.59□□□□□ -1.51
VPS13A-213ENST00000539950 AMY2AP04746 511 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 PTPN1P18031 435 aaKnown RBP5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms