RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 STK17AQ9UEE5 414 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 ATP6V0A2Q9Y487 856 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 KIAA0754O94854 1291 aa22.3■■□□□ 1.16
TMEM260-203ENST00000539559 KLHL30Q0D2K2 578 aa22.3■■□□□ 1.16
TMEM260-203ENST00000539559 RBAK-RBAKDNI3L0D1 243 aa22.3■■□□□ 1.16
TMEM260-203ENST00000539559 ERVK-9P63128 1117 aa22.3■■□□□ 1.16
TMEM260-203ENST00000539559 PTGISQ16647 500 aa22.3■■□□□ 1.16
TMEM260-203ENST00000539559 TMEM266Q2M3C6 531 aa22.3■■□□□ 1.16
TMEM260-203ENST00000539559 KRT79Q5XKE5 535 aa22.3■■□□□ 1.16
TMEM260-203ENST00000539559 EPN3Q9H201 632 aa22.3■■□□□ 1.16
TMEM260-203ENST00000539559 ZHX3Q9H4I2 956 aa22.3■■□□□ 1.16
TMEM260-203ENST00000539559 E7EVH7 732 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 PPP1R37O75864 691 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 FKBP3Q00688 224 aaKnown RBP22.29■■□□□ 1.16
TMEM260-203ENST00000539559 LRRC47Q8N1G4 583 aaKnown RBP22.29■■□□□ 1.16
TMEM260-203ENST00000539559 DNAJC19Q96DA6 116 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 ATP6V1G3Q96LB4 118 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 CCT8L2Q96SF2 557 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 PANK4Q9NVE7 773 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 BCCIPQ9P287 314 aaKnown RBP eCLIP22.29■■□□□ 1.16
TMEM260-203ENST00000539559 LEMD3Q9Y2U8 911 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 CCDC88AQ3V6T2 1871 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 E9PMD0 336 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 MEFVO15553 781 aaPredicted RBP22.29■■□□□ 1.16
TMEM260-203ENST00000539559 CDC37Q16543 378 aaPredicted RBP22.29■■□□□ 1.16
TMEM260-203ENST00000539559 SLC18A3Q16572 532 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 GPCPD1Q9NPB8 672 aa22.29■■□□□ 1.16
TMEM260-203ENST00000539559 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.29■■□□□ 1.16
TMEM260-203ENST00000539559 FNTAP49354 379 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 IFT88Q13099 833 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 ZCWPW2Q504Y3 356 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 ZNF772Q68DY9 489 aaPredicted RBP22.28■■□□□ 1.16
TMEM260-203ENST00000539559 B4GALNT4Q76KP1 1039 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 LZTS2Q9BRK4 669 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 NEUROG2Q9H2A3 272 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 SNED1Q8TER0 1413 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 FXR2P51116 673 aaKnown RBP eCLIP22.28■■□□□ 1.16
TMEM260-203ENST00000539559 FAM26FQ5R3K3 315 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 SPTY2D1Q68D10 685 aaPredicted RBP22.28■■□□□ 1.16
TMEM260-203ENST00000539559 PROM2Q8N271 834 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 USP38Q8NB14 1042 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 MYCBPAPQ8TBZ2 947 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 TSKSQ9UJT2 592 aa22.28■■□□□ 1.16
TMEM260-203ENST00000539559 LOC102724159A0A0B4J2E5 919 aa22.27■■□□□ 1.16
TMEM260-203ENST00000539559 FLT3P36888 993 aa22.27■■□□□ 1.16
TMEM260-203ENST00000539559 MDH1P40925 334 aaKnown RBP22.27■■□□□ 1.16
TMEM260-203ENST00000539559 PWP2Q15269 919 aaKnown RBP22.27■■□□□ 1.16
TMEM260-203ENST00000539559 CRY2Q49AN0 593 aa22.27■■□□□ 1.16
TMEM260-203ENST00000539559 NLRP14Q86W24 1093 aa22.27■■□□□ 1.16
TMEM260-203ENST00000539559 PCDHGC5Q9Y5F6 944 aa22.27■■□□□ 1.16
TMEM260-203ENST00000539559 CEP104O60308 925 aa22.27■■□□□ 1.16
TMEM260-203ENST00000539559 TMOD1P28289 359 aa22.27■■□□□ 1.16
TMEM260-203ENST00000539559 ITGB3BPQ13352 177 aaPredicted RBP22.27■■□□□ 1.16
TMEM260-203ENST00000539559 MARCH6O60337 910 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 BTDP43251 543 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 DDX47Q9H0S4 455 aaKnown RBP22.26■■□□□ 1.15
TMEM260-203ENST00000539559 LRRC4CQ9HCJ2 640 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 ABCB11O95342 1321 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 BAG3O95817 575 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 HSD17B3P37058 310 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 ADCY7P51828 1080 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 PTK2Q05397 1052 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 UAP1Q16222 522 aaPredicted RBP22.26■■□□□ 1.15
TMEM260-203ENST00000539559 CNPY4Q8N129 248 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 RIC8AQ9NPQ8 531 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 IRS2Q9Y4H2 1338 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 ROBO3Q96MS0 1386 aa22.26■■□□□ 1.15
TMEM260-203ENST00000539559 SLC9A1P19634 815 aa22.25■■□□□ 1.15
TMEM260-203ENST00000539559 IBSPP21815 317 aaPredicted RBP22.25■■□□□ 1.15
TMEM260-203ENST00000539559 ECHS1P30084 290 aa22.25■■□□□ 1.15
TMEM260-203ENST00000539559 ASIC2Q16515 512 aa22.25■■□□□ 1.15
TMEM260-203ENST00000539559 PRPF38AQ8NAV1 312 aaKnown RBP22.25■■□□□ 1.15
TMEM260-203ENST00000539559 TAF4BQ92750 862 aa22.25■■□□□ 1.15
TMEM260-203ENST00000539559 HAS1Q92839 578 aa22.25■■□□□ 1.15
TMEM260-203ENST00000539559 TMEM119Q4V9L6 283 aa22.25■■□□□ 1.15
TMEM260-203ENST00000539559 RBM17Q96I25 401 aaKnown RBP22.25■■□□□ 1.15
TMEM260-203ENST00000539559 RNF14Q9UBS8 474 aa22.25■■□□□ 1.15
TMEM260-203ENST00000539559 MYH4Q9Y623 1939 aa22.25■■□□□ 1.15
TMEM260-203ENST00000539559 ITGA4P13612 1032 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 EPS15P42566 896 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 SF3A3Q12874 501 aaKnown RBP eCLIP22.24■■□□□ 1.15
TMEM260-203ENST00000539559 RPS6KA1Q15418 735 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 HERC4Q5GLZ8 1057 aaPredicted RBP22.24■■□□□ 1.15
TMEM260-203ENST00000539559 ZNF571Q7Z3V5 609 aaPredicted RBP22.24■■□□□ 1.15
TMEM260-203ENST00000539559 MREGQ8N565 214 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 TAF1DQ9H5J8 278 aaPredicted RBP22.24■■□□□ 1.15
TMEM260-203ENST00000539559 KIAA1024Q9UPX6 916 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 SPRED3Q2MJR0 410 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 TRIM59Q8IWR1 403 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 TEX11Q8IYF3 940 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 NEDD1Q8NHV4 660 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 WHAMMQ8TF30 809 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 CD248Q9HCU0 757 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 PDHBP11177 359 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 TNNC1P63316 161 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 RTFDC1Q9BY42 306 aaPredicted RBP22.24■■□□□ 1.15
TMEM260-203ENST00000539559 EDEM3Q9BZQ6 932 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 TMBIM4Q9HC24 238 aa22.24■■□□□ 1.15
TMEM260-203ENST00000539559 POTEB3A0JP26 581 aa22.23■■□□□ 1.15
TMEM260-203ENST00000539559 TMCO5BA8MYB1 307 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms