RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 MAP3K9P80192 1104 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 CACNB1Q02641 598 aaPredicted RBP17.65■□□□□ 0.42
USH1C-204ENST00000526313 NAA30Q147X3 362 aaPredicted RBP17.65■□□□□ 0.42
USH1C-204ENST00000526313 EDRF1Q3B7T1 1238 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 NBPF12Q5TAG4 269 aaPredicted RBP17.65■□□□□ 0.42
USH1C-204ENST00000526313 NIPA1Q7RTP0 329 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 ATRIPQ8WXE1 791 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 MXRA8Q9BRK3 442 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 WDR11Q9BZH6 1224 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 TBC1D7Q9P0N9 293 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 COL4A3BPQ9Y5P4 624 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 NDUFA10O95299 355 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 ARP10275 920 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 ARHGAP25P42331 645 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 HSP90AA2PQ14568 343 aaPredicted RBP17.64■□□□□ 0.41
USH1C-204ENST00000526313 BMT2Q1RMZ1 405 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 ZNF662Q6ZS27 426 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 KRT26Q7Z3Y9 468 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 MCF2L2Q86YR7 1114 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 ACRBPQ8NEB7 543 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 RIT2Q99578 217 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 COL20A1Q9P218 1284 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 PNMA2Q9UL42 364 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 REXO2Q9Y3B8 237 aaKnown RBP17.64■□□□□ 0.41
USH1C-204ENST00000526313 FRMPD4Q14CM0 1322 aa17.64■□□□□ 0.41
USH1C-204ENST00000526313 TRAF5O00463 557 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 USP14P54578 494 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 UBXN2AP68543 259 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 CYP4A11Q02928 519 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 R3HDM1Q15032 1099 aaKnown RBP17.63■□□□□ 0.41
USH1C-204ENST00000526313 DCAF15Q66K64 600 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 HOOK2Q96ED9 719 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 BHMT2Q9H2M3 363 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 PPP1R9AQ9ULJ8 1098 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 TRAF3IP3Q9Y228 551 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 GJA3Q9Y6H8 435 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 DOCK1Q14185 1865 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 NFIBO00712 420 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 GAS7O60861 476 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 FDX1P10109 184 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 VCAM1P19320 739 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 HOXD13P35453 343 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 RAD51AP2Q09MP3 1159 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 EPHA7Q15375 998 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 TSR1Q2NL82 804 aaKnown RBP17.63■□□□□ 0.41
USH1C-204ENST00000526313 RINT1Q6NUQ1 792 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 ARHGAP27Q6ZUM4 889 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 DYDC2Q96IM9 177 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 ZNF577Q9BSK1 485 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 RUSC1Q9BVN2 902 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 IRX2Q9BZI1 471 aaPredicted RBP17.63■□□□□ 0.41
USH1C-204ENST00000526313 EDEM3Q9BZQ6 932 aa17.63■□□□□ 0.41
USH1C-204ENST00000526313 ITGB5P18084 799 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 CASP5P51878 434 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 C1orf186Q6ZWK4 172 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 SFR1Q86XK3 245 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 TRIM59Q8IWR1 403 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 UNC45AQ9H3U1 944 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 LZTFL1Q9NQ48 299 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 OLFML3Q9NRN5 406 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 MYO1AQ9UBC5 1043 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 ZNF541Q9H0D2 1346 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 KIF5CO60282 957 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 URI1O94763 535 aaPredicted RBP17.62■□□□□ 0.41
USH1C-204ENST00000526313 DGKZQ13574 1117 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 CTTNQ14247 550 aaKnown RBP17.62■□□□□ 0.41
USH1C-204ENST00000526313 SAMD1Q6SPF0 538 aaPredicted RBP17.62■□□□□ 0.41
USH1C-204ENST00000526313 SLC30A10Q6XR72 485 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 CCDC170Q8IYT3 715 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 SCYL3Q8IZE3 742 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 ZNF397Q8NF99 534 aaPredicted RBP17.62■□□□□ 0.41
USH1C-204ENST00000526313 PLAGL2Q9UPG8 496 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 UBIAD1Q9Y5Z9 338 aa17.62■□□□□ 0.41
USH1C-204ENST00000526313 PARP14Q460N5 1801 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 IPO5O00410 1097 aaKnown RBP17.61■□□□□ 0.41
USH1C-204ENST00000526313 PDXKO00764 312 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 GAP43P17677 238 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 BACE1P56817 501 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 KCNMA1Q12791 1236 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 MTMR2Q13614 643 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 KNOP1Q1ED39 458 aaKnown RBP17.61■□□□□ 0.41
USH1C-204ENST00000526313 PCNX4Q63HM2 1172 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 NELFCDQ8IXH7 590 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 SYTL5Q8TDW5 730 aaPredicted RBP17.61■□□□□ 0.41
USH1C-204ENST00000526313 NACC1Q96RE7 527 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 TEKT3Q9BXF9 490 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 MRFAP1Q9Y605 127 aa17.61■□□□□ 0.41
USH1C-204ENST00000526313 APOBEC3FQ8IUX4 373 aaKnown RBP17.6■□□□□ 0.41
USH1C-204ENST00000526313 TPH2Q8IWU9 490 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 LRRN4CLQ8ND94 238 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 RAVER2Q9HCJ3 691 aaKnown RBP17.6■□□□□ 0.41
USH1C-204ENST00000526313 ZNHIT6Q9NWK9 470 aaKnown RBP17.6■□□□□ 0.41
USH1C-204ENST00000526313 RSPH10B2B2RC85 870 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 EPHB6O15197 1021 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 DHX15O43143 795 aaKnown RBP17.6■□□□□ 0.41
USH1C-204ENST00000526313 FLOT1O75955 427 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 ABL1P00519 1130 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 RSPH10BP0C881 870 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 SPP2Q13103 211 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 MUM1L1Q5H9M0 696 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms