RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SNX17Q15036 470 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 NFE2Q16621 373 aaPredicted RBP6.18□□□□□ -1.42
CD44-220ENST00000525688 INAVAQ3KP66 663 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 GPR158Q5T848 1215 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 NLRX1Q86UT6 975 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 PASD1Q8IV76 773 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 NETO2Q8NC67 525 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 FLCNQ8NFG4 579 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 DLG3Q92796 817 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 SLC5A5Q92911 643 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 MTMR8Q96EF0 704 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 CCDC8Q9H0W5 538 aaPredicted RBP6.18□□□□□ -1.42
CD44-220ENST00000525688 SMOC1Q9H4F8 434 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 PRDM7Q9NQW5 492 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 TCEAL9Q9UHQ7 104 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 TRHDEQ9UKU6 1024 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 B3GALT1Q9Y5Z6 326 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 CEP164Q9UPV0 1460 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 HGSO14964 777 aaPredicted RBP6.17□□□□□ -1.42
CD44-220ENST00000525688 FBXO21O94952 628 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 SMAD3P84022 425 aaKnown RBP6.17□□□□□ -1.42
CD44-220ENST00000525688 CYP4F8P98187 520 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 KIR3DS1Q14943 382 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 ZNF174Q15697 407 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 SMAD2Q15796 467 aaKnown RBP6.17□□□□□ -1.42
CD44-220ENST00000525688 RGL3Q3MIN7 710 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 STEAP3Q658P3 488 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 FMNL3Q8IVF7 1028 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 RAVER1Q8IY67 606 aaKnown RBP6.17□□□□□ -1.42
CD44-220ENST00000525688 CBARPQ8N350 705 aaPredicted RBP6.17□□□□□ -1.42
CD44-220ENST00000525688 CLRN3Q8NCR9 226 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 PHOSPHO1Q8TCT1 267 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 MORC4Q8TE76 937 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 SHISA4Q96DD7 197 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 ZNF652Q9Y2D9 606 aa6.17□□□□□ -1.42
CD44-220ENST00000525688 MRC2Q9UBG0 1479 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 A0A0U1RQG5 324 aaPredicted RBP6.16□□□□□ -1.42
CD44-220ENST00000525688 E2F8A0AVK6 867 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 SRGAP3O43295 1099 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 PSPNO60542 156 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 CYP17A1P05093 508 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 PNLIPP16233 465 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 TACR1P25103 407 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 GJA4P35212 333 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 LRRC32Q14392 662 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 TERF2Q15554 542 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 DDB1Q16531 1140 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 HSP90AB2PQ58FF8 381 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 BROXQ5VW32 411 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 FSTL4Q6MZW2 842 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 CC2D1AQ6P1N0 951 aaPredicted RBP6.16□□□□□ -1.42
CD44-220ENST00000525688 KCTD1Q719H9 257 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 CABP7Q86V35 215 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 RASSF3Q86WH2 238 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 DCP2Q8IU60 420 aaKnown RBP6.16□□□□□ -1.42
CD44-220ENST00000525688 KIAA1958Q8N8K9 716 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 AGBL5Q8NDL9 886 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 SEC14L1Q92503 715 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 CHMP4CQ96CF2 233 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 CAMKK2Q96RR4 588 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 ELF4Q99607 663 aaPredicted RBP6.16□□□□□ -1.42
CD44-220ENST00000525688 VTA1Q9NP79 307 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 ACSS2Q9NR19 701 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 KCNH7Q9NS40 1196 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 ANGEL1Q9UNK9 670 aaKnown RBP6.16□□□□□ -1.42
CD44-220ENST00000525688 FAN1Q9Y2M0 1017 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 ATP23Q9Y6H3 246 aa6.16□□□□□ -1.42
CD44-220ENST00000525688 WDR62O43379 1518 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 A0A1W2PQJ5 194 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 HIP1RO75146 1068 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 KRT37O76014 449 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 MAP4K4O95819 1239 aaPredicted RBP6.15□□□□□ -1.42
CD44-220ENST00000525688 CENPBP07199 599 aaPredicted RBP6.15□□□□□ -1.42
CD44-220ENST00000525688 SLC9A1P19634 815 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 SDHAP31040 664 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 SSTR4P31391 388 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 LSP1P33241 339 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 RAB27AP51159 221 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 TIGD5Q53EQ6 642 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 BICRALQ6AI39 1079 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 EP400NLQ6ZTU2 488 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 HDGFL2Q7Z4V5 671 aaPredicted RBP6.15□□□□□ -1.42
CD44-220ENST00000525688 TRIM48Q8IWZ4 208 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 ZZZ3Q8IYH5 903 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 ZNF610Q8N9Z0 462 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 AHCYL2Q96HN2 611 aaKnown RBP6.15□□□□□ -1.42
CD44-220ENST00000525688 YIPF4Q9BSR8 244 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 SLC13A1Q9BZW2 595 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 TNFRSF12AQ9NP84 129 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 MBNL3Q9NUK0 354 aaKnown RBP6.15□□□□□ -1.42
CD44-220ENST00000525688 ASH2LQ9UBL3 628 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 ADAMTS6Q9UKP5 1117 aa6.15□□□□□ -1.42
CD44-220ENST00000525688 TNKSO95271 1327 aa6.15□□□□□ -1.43
CD44-220ENST00000525688 PRDM2Q13029 1718 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 SCDO00767 359 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 KCNK3O14649 394 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 SGSM2O43147 1006 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 AKAP10O43572 662 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 TSPAN6O43657 245 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 WNT11O96014 354 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms