RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 KBTBD13C9JR72 458 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 H3BRJ5 948 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 LINC01387J3KSC0 135 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 DYRK3O43781 588 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 MSCO60682 206 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 TNFRSF21O75509 655 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 IVLP07476 585 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 ZNF853P0CG23 659 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 XRCC5P13010 732 aaKnown RBP5.8□□□□□ -1.48
CD44-218ENST00000525469 PPP2R1AP30153 589 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 CCND3P30281 292 aaPredicted RBP5.8□□□□□ -1.48
CD44-218ENST00000525469 CASQ1P31415 396 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 HIBADHP31937 336 aaKnown RBP5.8□□□□□ -1.48
CD44-218ENST00000525469 CD68P34810 354 aaPredicted RBP5.8□□□□□ -1.48
CD44-218ENST00000525469 DDIT3P35638 169 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 TCP10Q12799 353 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 BMS1Q14692 1282 aaKnown RBP5.8□□□□□ -1.48
CD44-218ENST00000525469 NKAPLQ5M9Q1 402 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 MAP3K21Q5TCX8 1036 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 DUSP27Q5VZP5 1158 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 MFSD14CQ5VZR4 134 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 SCYL3Q8IZE3 742 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 GJD3Q8N144 294 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 C1orf127Q8N9H9 656 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 ARRDC4Q8NCT1 418 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 ZNF397Q8NF99 534 aaPredicted RBP5.8□□□□□ -1.48
CD44-218ENST00000525469 TBC1D22AQ8WUA7 517 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 FAM151AQ8WW52 585 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 TNPO1Q92973 898 aaKnown RBP5.8□□□□□ -1.48
CD44-218ENST00000525469 ZDHHC15Q96MV8 337 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 FAM210AQ96ND0 272 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 PLEKHF1Q96S99 279 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 PAIP2Q9BPZ3 127 aaKnown RBP5.8□□□□□ -1.48
CD44-218ENST00000525469 CEP41Q9BYV8 373 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 ADAM19Q9H013 955 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 PHAXQ9H814 394 aaKnown RBP5.8□□□□□ -1.48
CD44-218ENST00000525469 CNTN3Q9P232 1028 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 SALL4Q9UJQ4 1053 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 PHIPQ8WWQ0 1821 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 DOCK2Q92608 1830 aa5.8□□□□□ -1.48
CD44-218ENST00000525469 GBF1Q92538 1859 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 SMTNL1A8MU46 457 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 PDE2AO00408 941 aaPredicted RBP5.79□□□□□ -1.48
CD44-218ENST00000525469 DNM1LO00429 736 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 FZD6O60353 706 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 TPM1P09493 284 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 SLFN14P0C7P3 912 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 RAG1P15918 1043 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 ERCC3P19447 782 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 NOS3P29474 1203 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 RGS2P41220 211 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 TDO2P48775 406 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 IFIT5Q13325 482 aaKnown RBP5.79□□□□□ -1.48
CD44-218ENST00000525469 CCDC174Q6PII3 467 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 SLC39A5Q6ZMH5 540 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 SND1Q7KZF4 910 aaKnown RBP eCLIP5.79□□□□□ -1.48
CD44-218ENST00000525469 UBE3BQ7Z3V4 1068 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 EGFL6Q8IUX8 553 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 TMEM102Q8N9M5 508 aaPredicted RBP5.79□□□□□ -1.48
CD44-218ENST00000525469 TDRD7Q8NHU6 1098 aaKnown RBP5.79□□□□□ -1.48
CD44-218ENST00000525469 LPAR1Q92633 364 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 CITED4Q96RK1 184 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 MRIQ9BWK5 157 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 ANO2Q9NQ90 1003 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 ARGLU1Q9NWB6 273 aaPredicted RBP5.79□□□□□ -1.48
CD44-218ENST00000525469 FEZ2Q9UHY8 353 aaPredicted RBP5.79□□□□□ -1.48
CD44-218ENST00000525469 MSRAQ9UJ68 235 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 MAP3K2Q9Y2U5 619 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 AFG3L2Q9Y4W6 797 aa5.79□□□□□ -1.48
CD44-218ENST00000525469 SMCHD1A6NHR9 2005 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 A6NHS1 94 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 F8W735 103 aaPredicted RBP5.78□□□□□ -1.48
CD44-218ENST00000525469 CHL1O00533 1208 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 FSCN2O14926 492 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 PPP1R12AO14974 1030 aaPredicted RBP5.78□□□□□ -1.48
CD44-218ENST00000525469 NRDCO43847 1150 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 MAPK4P31152 587 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 GYG1P46976 350 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 KCNQ1P51787 676 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 NHLH1Q02575 133 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 TFF2Q03403 129 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 FPGSQ05932 587 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 TRIM60Q495X7 471 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 ZSCAN29Q8IWY8 852 aaPredicted RBP5.78□□□□□ -1.48
CD44-218ENST00000525469 SUGP1Q8IWZ8 645 aaKnown RBP5.78□□□□□ -1.48
CD44-218ENST00000525469 GPRC5AQ8NFJ5 357 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 CEP89Q96ST8 783 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 POP1Q99575 1024 aaKnown RBP5.78□□□□□ -1.48
CD44-218ENST00000525469 KCNH6Q9H252 994 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 CHRDQ9H2X0 955 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 OSGEPQ9NPF4 335 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 PDLIM7Q9NR12 457 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 CNNM1Q9NRU3 951 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 DZANK1Q9NVP4 752 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 DDX20Q9UHI6 824 aaKnown RBP5.78□□□□□ -1.48
CD44-218ENST00000525469 TACC3Q9Y6A5 838 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 IVNS1ABPQ9Y6Y0 642 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 ATAD5Q96QE3 1844 aa5.78□□□□□ -1.48
CD44-218ENST00000525469 LRRC37A2A6NM11 1700 aa5.77□□□□□ -1.49
CD44-218ENST00000525469 PRRC2BQ5JSZ5 2229 aaKnown RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms