RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PCDHGB7Q9Y5F8 929 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PCDHA5Q9Y5H7 936 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 TIMM13Q9Y5L4 95 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 BACE2Q9Y5Z0 518 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 EID1Q9Y6B2 187 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SCINQ9Y6U3 715 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 KDM2BQ8NHM5 1336 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 WASHC2CQ9Y4E1 1318 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 IRS2Q9Y4H2 1338 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 A0A087X1B8 175 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 A0A0G2JLL6 359 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 A0A0U1RQG5 324 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MYOCOSA0A1B0GUC4 107 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 E2F8A0AVK6 867 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ESYT3A0FGR9 886 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GOLGA6CA6NDK9 693 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GOLGA6BA6NDN3 693 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MEIS3P2A8K0S8 358 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GOLGA6L6A8MZA4 724 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CHURC1-FNTBB4DL54 471 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 IQCJ-SCHIP1C9J366 451 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 C22orf46C9J442 243 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM47E-STBD1D6RA91 191 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 H0Y858 1186 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MEIS1O00470 390 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NRP1O14786 923 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 TBX3O15119 743 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NPHP1O15259 732 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 FGF10O15520 208 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PDPK1O15530 556 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 KCNQ2O43526 872 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 TSPAN6O43657 245 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NOBOXO60393 691 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 B4GALT4O60513 344 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GREM1O60565 184 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 HIP1RO75146 1068 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 RFPL3O75679 317 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ALDH1L1O75891 902 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 RASGRP1O95267 797 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ASMTLO95671 621 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 LDHAP00338 332 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 F13A1P00488 732 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 FGAP02671 866 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PF4P02776 101 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 FUCA1P04066 466 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ASGR2P07307 311 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 DBHP09172 617 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GOLGA6DP0CG33 693 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 U2AF1L5P0DN76 240 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CBSLP0DN79 551 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GNAT1P11488 350 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 COL6A1P12109 1028 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NME1P15531 152 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CPEP16870 476 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF20P17024 532 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CD53P19397 219 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 TFE3P19532 575 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 COMTP21964 271 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MCCP23508 829 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 BDNFP23560 247 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GUCY2CP25092 1073 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 LMO1P25800 156 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CNGA1P29973 690 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 HIBADHP31937 336 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 TRHRP34981 398 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 IL13P35225 146 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CBSP35520 551 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 COPB2P35606 906 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SOX5P35711 763 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 STAT3P40763 770 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CASP2P42575 452 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 KCNJ6P48051 423 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CDR1P51861 262 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ELLP55199 621 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 EVA1CP58658 441 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ERVFC1P60507 584 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 IRX6P78412 446 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ST5P78524 1137 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SMAD3P84022 425 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NFKB2Q00653 900 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 U2AF1Q01081 240 aaKnown RBP eCLIP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 FOXD4Q12950 439 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NFATC3Q12968 1075 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 RASGRF1Q13972 1273 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 RASA3Q14644 834 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 USP10Q14694 798 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SSPNQ14714 243 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SMAD2Q15796 467 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPP2R5EQ16537 467 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 FXNQ16595 210 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ATP2B3Q16720 1220 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 DDR2Q16832 855 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 LONRF2Q1L5Z9 754 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 KIZQ2M2Z5 673 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SKOR2Q2VWA4 1001 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMEM95Q3KNT9 176 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 LSM12Q3MHD2 195 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SPDYE7PQ495Y7 208 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MTERF2Q49AM1 385 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SEZ6Q53EL9 994 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms