RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 ADAM33Q9BZ11 813 aa9.15□□□□□ -0.94
CLDND1-229ENST00000513988 SPATA6Q9NWH7 488 aaPredicted RBP9.15□□□□□ -0.94
CLDND1-229ENST00000513988 ZSCAN32Q9NX65 697 aa9.15□□□□□ -0.94
CLDND1-229ENST00000513988 SWAP70Q9UH65 585 aa9.15□□□□□ -0.94
CLDND1-229ENST00000513988 DBR1Q9UK59 544 aaKnown RBP9.15□□□□□ -0.94
CLDND1-229ENST00000513988 ADAMTS20P59510 1910 aa9.15□□□□□ -0.95
CLDND1-229ENST00000513988 KIAA1671Q9BY89 1806 aa9.15□□□□□ -0.95
CLDND1-229ENST00000513988 ARHGAP33O14559 1287 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 EOMESO95936 686 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 CYP2E1P05181 493 aaPredicted RBP9.14□□□□□ -0.95
CLDND1-229ENST00000513988 UBE3AQ05086 875 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 TFCP2Q12800 502 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 PDE12Q6L8Q7 609 aaKnown RBP9.14□□□□□ -0.95
CLDND1-229ENST00000513988 PHLDB3Q6NSJ2 640 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 XRRA1Q6P2D8 792 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 DHX37Q8IY37 1157 aaKnown RBP9.14□□□□□ -0.95
CLDND1-229ENST00000513988 RASGRP4Q8TDF6 673 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 SCFD2Q8WU76 684 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 KAT2BQ92831 832 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 CASP10Q92851 521 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 CCDC17Q96LX7 622 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 USP44Q9H0E7 712 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 KANSL2Q9H9L4 492 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 SEMA4GQ9NTN9 838 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 MCM9Q9NXL9 1143 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 PLXNA4Q9HCM2 1894 aa9.14□□□□□ -0.95
CLDND1-229ENST00000513988 PIEZO2Q9H5I5 2752 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 NARSO43776 548 aaKnown RBP9.13□□□□□ -0.95
CLDND1-229ENST00000513988 LILRB5O75023 590 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 IGSF3O75054 1194 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 DGKIO75912 1065 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 WEE2P0C1S8 567 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 TXNP10599 105 aaKnown RBP9.13□□□□□ -0.95
CLDND1-229ENST00000513988 NCLP19338 710 aaKnown RBP9.13□□□□□ -0.95
CLDND1-229ENST00000513988 CASTP20810 708 aaKnown RBP9.13□□□□□ -0.95
CLDND1-229ENST00000513988 LAIR1Q6GTX8 287 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 CMTR2Q8IYT2 770 aaKnown RBP9.13□□□□□ -0.95
CLDND1-229ENST00000513988 GLIS3Q8NEA6 775 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 AFG1LQ8WV93 481 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 GATA6Q92908 595 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 TRERF1Q96PN7 1200 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 KCNK12Q9HB15 430 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 CYP39A1Q9NYL5 469 aa9.13□□□□□ -0.95
CLDND1-229ENST00000513988 ADD3Q9UEY8 706 aaKnown RBP9.13□□□□□ -0.95
CLDND1-229ENST00000513988 FOXD2O60548 495 aaPredicted RBP9.12□□□□□ -0.95
CLDND1-229ENST00000513988 RETP07949 1114 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 CTSHP09668 335 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 ALAS1P13196 640 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 SPINK2P20155 84 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 ALDH5A1P51649 535 aaPredicted RBP9.12□□□□□ -0.95
CLDND1-229ENST00000513988 C19orf57Q0VDD7 668 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 FOXC1Q12948 553 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 MFSD10Q14728 455 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 CSRP2Q16527 193 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 LPAL2Q16609 132 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 TKFCQ3LXA3 575 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 PLPP4Q5VZY2 271 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 LARP1BQ659C4 914 aaKnown RBP9.12□□□□□ -0.95
CLDND1-229ENST00000513988 ADGRD1Q6QNK2 874 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 C19orf48Q6RUI8 117 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 NSMFQ6X4W1 530 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 SERINC5Q86VE9 423 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 DYNLL2Q96FJ2 89 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 DDX27Q96GQ7 796 aaKnown RBP9.12□□□□□ -0.95
CLDND1-229ENST00000513988 PURBQ96QR8 312 aaKnown RBP9.12□□□□□ -0.95
CLDND1-229ENST00000513988 KATNAL1Q9BW62 490 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 OSBPL7Q9BZF2 842 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 CACNA2D2Q9NY47 1150 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 MYO5AQ9Y4I1 1855 aaKnown RBP9.12□□□□□ -0.95
CLDND1-229ENST00000513988 PTPN13Q12923 2485 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 RALGAPA1Q6GYQ0 2036 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 KALRNO60229 2985 aa9.12□□□□□ -0.95
CLDND1-229ENST00000513988 MYH7BA7E2Y1 1941 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 IL16Q14005 1332 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 F5H6K3 240 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 KCNK5O95279 499 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 NDUFB10O96000 172 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 FDX1P10109 184 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 GLULP15104 373 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 ERVFC1P60507 584 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 KLRC3Q07444 240 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 NONOQ15233 471 aaKnown RBP eCLIP9.11□□□□□ -0.95
CLDND1-229ENST00000513988 KIAA0753Q2KHM9 967 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 PAN2Q504Q3 1202 aaKnown RBP9.11□□□□□ -0.95
CLDND1-229ENST00000513988 PPP4R3BQ5MIZ7 849 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 ATAT1Q5SQI0 421 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 RARS2Q5T160 578 aaKnown RBP9.11□□□□□ -0.95
CLDND1-229ENST00000513988 KIAA1841Q6NSI8 718 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 OTOP3Q7RTS5 596 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 PJA1Q8NG27 643 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 MAP4K1Q92918 833 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 BBC3Q96PG8 261 aaPredicted RBP9.11□□□□□ -0.95
CLDND1-229ENST00000513988 BCO2Q9BYV7 579 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 COPRSQ9NQ92 184 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 IGSF9Q9P2J2 1179 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 FEM1BQ9UK73 627 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 PCDHB12Q9Y5F1 795 aa9.11□□□□□ -0.95
CLDND1-229ENST00000513988 FANCIQ9NVI1 1328 aa9.1□□□□□ -0.95
CLDND1-229ENST00000513988 LCTP09848 1927 aa9.1□□□□□ -0.95
CLDND1-229ENST00000513988 LOC102724159A0A0B4J2E5 919 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms