RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 MARCH8Q5T0T0 291 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 CCDC155Q8N6L0 562 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 CUL5Q93034 780 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 NECAB3Q96P71 396 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 UIMC1Q96RL1 719 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 SUGCTQ9HAC7 445 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 JADE2Q9NQC1 790 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 COL4A4P53420 1690 aaPredicted RBP12.83□□□□□ -0.35
LIMCH1-214ENST00000512228 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 LINC01553A4QN01 128 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 STXBP3O00186 592 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 PPFIA3O75145 1194 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 BMP1P13497 986 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 KCNJ6P48051 423 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 KCNQ1P51787 676 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 IKBKEQ14164 716 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 TJAP1Q5JTD0 557 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 XRRA1Q6P2D8 792 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 NLRX1Q86UT6 975 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 GPRASP2Q96D09 838 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 MTUS1Q9ULD2 1270 aa12.83□□□□□ -0.36
LIMCH1-214ENST00000512228 EDIL3O43854 480 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 CDC45O75419 566 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 MARK3P27448 753 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 ARHGAP4P98171 946 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 APOBRQ0VD83 1088 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 RTN1Q16799 776 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 FAM26DQ5JW98 314 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 ATXN2LQ8WWM7 1075 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 ZBED2Q9BTP6 218 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 RIC8AQ9NPQ8 531 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 KCNH7Q9NS40 1196 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 SNX14Q9Y5W7 946 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 CUL9Q8IWT3 2517 aa12.82□□□□□ -0.36
LIMCH1-214ENST00000512228 SPTBN5Q9NRC6 3674 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 KLF18A0A0U1RQI7 1052 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 SMCO2A6NFE2 343 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 KIF28PB7ZC32 967 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 ZBTB43O43298 467 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 PARNO95453 639 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 CLK2P49760 499 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 MRPS5P82675 430 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 ITGB3BPQ13352 177 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 MTMR1Q13613 665 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 PKN1Q16512 942 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 GDPD5Q8WTR4 605 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 SEPT1Q8WYJ6 367 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 RAD9AQ99638 391 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 MXRA8Q9BRK3 442 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 C17orf80Q9BSJ5 609 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 THEGQ9P2T0 379 aa12.81□□□□□ -0.36
LIMCH1-214ENST00000512228 SPDYE3A6NKU9 549 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 FAM86B1E9PN63 330 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 CCNE2O96020 404 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 FAM86B2P0C5J1 330 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 HSPA4P34932 840 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 ERVK-21P61565 698 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 HTRA4P83105 476 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 MGAT3Q09327 533 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 RNF20Q5VTR2 975 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 Q6ZUG5 572 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 RTN4RL1Q86UN2 441 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 MYOCDQ8IZQ8 938 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 ADAMTS19Q8TE59 1207 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 TRAPPC12Q8WVT3 735 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 DNAJB3Q8WWF6 145 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 LARP6Q9BRS8 491 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 EHMT1Q9H9B1 1298 aa12.8□□□□□ -0.36
LIMCH1-214ENST00000512228 EVPLQ92817 2033 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 MBLAC1A4D2B0 266 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 GOLGA8AA7E2F4 631 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 GOLGA8BA8MQT2 603 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 MEIS1O00470 390 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 DHX15O43143 795 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 UPP2O95045 317 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 INSRRP14616 1297 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 NAPAP54920 295 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 IGBP1P78318 339 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 LPIN1Q14693 890 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 GRIK4Q16099 956 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 JAKMIP3Q5VZ66 844 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 SYNE3Q6ZMZ3 975 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 SP7Q8TDD2 431 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 CRYGNQ8WXF5 182 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 TOP1MTQ969P6 601 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 JAKMIP1Q96N16 626 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 ANO3Q9BYT9 981 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 AGO3Q9H9G7 860 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 AGO4Q9HCK5 861 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 RBM28Q9NW13 759 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 BARHL2Q9NY43 387 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 WDR81Q562E7 1941 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 NRCAMQ92823 1304 aa12.79□□□□□ -0.36
LIMCH1-214ENST00000512228 MYO7AQ13402 2215 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 NLRC5Q86WI3 1866 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 ATG2AQ2TAZ0 1938 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 TNFRSF10AO00220 468 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 ENPP3O14638 875 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 DTNBO60941 627 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 ATG7O95352 703 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms