RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 DCDC2CA8MYV0 355 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 TLR3O15455 904 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 EDIL3O43854 480 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 BAG4O95429 457 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 CYP3A7P24462 503 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 MCM7P33993 719 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 ACTR2P61160 394 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 TLE2Q04725 743 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 ZNF174Q15697 407 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 KIAA0753Q2KHM9 967 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 TRIM50Q86XT4 487 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 C7orf31Q8N865 590 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 LENG9Q96B70 501 aa12.92□□□□□ -0.34
LIMCH1-210ENST00000509454 MROH7Q68CQ1 1323 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 GSTTP1A0A1W2PQM5 241 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 NEMFO60524 1076 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 MARK3P27448 753 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 KRT76Q01546 638 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 CALCRLQ16602 461 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 TTC38Q5R3I4 469 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 PPP4R3AQ6IN85 833 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 MIS18BP1Q6P0N0 1132 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 SLC5A5Q92911 643 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 ZMYND8Q9ULU4 1186 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 NOD1Q9Y239 953 aa12.91□□□□□ -0.34
LIMCH1-210ENST00000509454 BRCA2P51587 3418 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 H3BRB1 525 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 CCNE2O96020 404 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 F2P00734 622 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 SYN1P17600 705 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 U2AF2P26368 475 aaKnown RBP eCLIP12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 FAM160B1Q5W0V3 765 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 ZNF746Q6NUN9 644 aaPredicted RBP12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 MIER3Q7Z3K6 550 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 FERMT3Q86UX7 667 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 KAT2BQ92831 832 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 MBOAT7Q96N66 472 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 RIT2Q99578 217 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 SMARCAD1Q9H4L7 1026 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 TUT1Q9H6E5 874 aaKnown RBP12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 ALPK3Q96L96 1907 aa12.9□□□□□ -0.34
LIMCH1-210ENST00000509454 DHX15O43143 795 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 PSAPP07602 524 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 CLTBP09497 229 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 SUPT20HL2P0C7V6 817 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 HOXD8P13378 290 aaPredicted RBP12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 SYT1P21579 422 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 NBR1Q14596 966 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 SNX17Q15036 470 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 NFRKBQ6P4R8 1299 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 TRMT1LQ7Z2T5 733 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 CKAP2LQ8IYA6 745 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 ETNPPLQ8TBG4 499 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 FAM20AQ96MK3 541 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 C16orf70Q9BSU1 422 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 SEZ6LQ9BYH1 1024 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 TRPV6Q9H1D0 765 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 UNC45AQ9H3U1 944 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 ZNF302Q9NR11 478 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 TMEM39AQ9NV64 488 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 TRPC6Q9Y210 931 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 GRIN2DO15399 1336 aa12.89□□□□□ -0.35
LIMCH1-210ENST00000509454 WDR64B1ANS9 1081 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 WNT7AO00755 349 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 TXKP42681 527 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 TRAPPC10P48553 1259 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 STAT5BP51692 787 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 JAK3P52333 1124 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 C1orf53Q5VUE5 145 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 FOXD4L5Q5VV16 416 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 SWSAP1Q6NVH7 229 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 PDXDC2PQ6P474 469 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 SMAP1Q8IYB5 467 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 SLFN12Q8IYM2 578 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 FOXD4L4Q8WXT5 416 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 DISC1Q9NRI5 854 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 TRMT13Q9NUP7 481 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 ERAP1Q9NZ08 941 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 HDAC6Q9UBN7 1215 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 PCDHA10Q9Y5I2 948 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 SCN10AQ9Y5Y9 1956 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 H0YGN5 161 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 TBX3O15119 743 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 STX6O43752 255 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 PSMD10O75832 226 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 SMIM10L2AP0DMW4 78 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 SMIM10L2BP0DMW5 78 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 SFNP31947 248 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 CDK7P50613 346 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 PTGISQ16647 500 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 NCAPH2Q6IBW4 605 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 ABHD15Q6UXT9 468 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 ANKRD33Q7Z3H0 272 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 KCNMB3Q9NPA1 279 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 GABBR1Q9UBS5 961 aa12.88□□□□□ -0.35
LIMCH1-210ENST00000509454 PDE4DIPQ5VU43 2346 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 EMSYQ7Z589 1322 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 C17orf102A2RUQ5 167 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 B4GALT4O60513 344 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 LGR5O75473 907 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms