RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, human

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-212	ENST00000498041	EP400NL	Q6ZTU2	488 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	KCTD1	Q719H9	257 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	RBM12B	Q8IXT5	1001 aa	Known RBP	4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	MARCH10	Q8NA82	808 aa	Predicted RBP	4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	SH3RF2	Q8TEC5	729 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	FNIP1	Q8TF40	1166 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	NOX5	Q96PH1	765 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	GORASP1	Q9BQQ3	440 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	CELF4	Q9BZC1	486 aa	Known RBP	4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	HSPBP1	Q9NZL4	362 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	SRPK3	Q9UPE1	567 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	COQ6	Q9Y2Z9	468 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	TBX22	Q9Y458	520 aa		4.22	□□□□□ -1.73
RIF1-212	ENST00000498041	ZNF561-AS1	K7EIQ3	104 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	ENPP3	O14638	875 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	OPA1	O60313	960 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	IGSF3	O75054	1194 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	DNAJC8	O75937	253 aa	Predicted RBP	4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	SASH1	O94885	1247 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	LTF	P02788	710 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	AMY2A	P04746	511 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	FAH	P16930	419 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	KCNA6	P17658	529 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	KRT15	P19012	456 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	AMY2B	P19961	511 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	IGFALS	P35858	605 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	JAM2	P57087	298 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	PAN2	Q504Q3	1202 aa	Known RBP	4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	GIMAP6	Q6P9H5	292 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	DDX53	Q86TM3	631 aa	Known RBP	4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	GGN	Q86UU5	652 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	PTRH1	Q86Y79	214 aa	Known RBP	4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	LINC00482	Q8N8I6	264 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	FEZF2	Q8TBJ5	459 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	ZBTB8A	Q96BR9	441 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	KCNC2	Q96PR1	638 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	C11orf84	Q9BUA3	381 aa	Predicted RBP	4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	CD244	Q9BZW8	370 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	TMA7	Q9Y2S6	64 aa	Known RBP	4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	TELO2	Q9Y4R8	837 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	CD2AP	Q9Y5K6	639 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	ADAMTS20	P59510	1910 aa		4.21	□□□□□ -1.74
RIF1-212	ENST00000498041	OTOL1	A6NHN0	477 aa	Predicted RBP	4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	MAN2B1	O00754	1011 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	SMARCA5	O60264	1052 aa	Predicted RBP	4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	SDS	P20132	328 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	GJA4	P35212	333 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	FLT3	P36888	993 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	ITGA1	P56199	1179 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	SKOR2	Q2VWA4	1001 aa	Predicted RBP	4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	TKFC	Q3LXA3	575 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	FIGN	Q5HY92	759 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	BTBD8	Q5XKL5	378 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	ZCCHC8	Q6NZY4	707 aa	Known RBP	4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	ABHD17C	Q6PCB6	329 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	HHIPL2	Q6UWX4	724 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	OVCH1	Q7RTY7	1134 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	SAPCD2	Q86UD0	394 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	CISD2	Q8N5K1	135 aa	Known RBP	4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	TTLL6	Q8N841	843 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	IGSF22	Q8N9C0	903 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	LINC01356	Q8N9X3	169 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	KY	Q8NBH2	561 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	NINJ1	Q92982	152 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	FEZ1	Q99689	392 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	KRTAP17-1	Q9BYP8	105 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	SMURF1	Q9HCE7	757 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	INTS7	Q9NVH2	962 aa	Known RBP	4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	TNPO3	Q9Y5L0	923 aa	Known RBP	4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	ATP23	Q9Y6H3	246 aa		4.2	□□□□□ -1.74
RIF1-212	ENST00000498041	SH3D21	A4FU49	640 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	ACOT7	O00154	380 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	FFAR3	O14843	346 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	CLASP2	O75122	1294 aa	Known RBP	4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	CELA3B	P08861	270 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	PTPN1	P18031	435 aa	Known RBP	4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	SMAD4	Q13485	552 aa	Known RBP	4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	C21orf62-AS1	Q17RA5	79 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	VWA3B	Q502W6	1294 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	TMEM177	Q53S58	311 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	VASN	Q6EMK4	673 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	TTLL7	Q6ZT98	887 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	UBE2R2	Q712K3	238 aa	Predicted RBP	4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	STK32C	Q86UX6	486 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	C2orf69	Q8N8R5	385 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	TMEM209	Q96SK2	561 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	SYT3	Q9BQG1	590 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	ADAM7	Q9H2U9	754 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	RIC8B	Q9NVN3	520 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	SPATA6	Q9NWH7	488 aa	Predicted RBP	4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	SAMD15	Q9P1V8	674 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	PLAA	Q9Y263	795 aa		4.19	□□□□□ -1.74
RIF1-212	ENST00000498041	SLC12A8	A0AV02	714 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	FAM90A27P	A6NNH2	459 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041		M0R2C6	588 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	KCNK3	O14649	394 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	ENO2	P09104	434 aa	Predicted RBP	4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	THBS2	P35442	1172 aa		4.18	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms