RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, human

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP200-208	ENST00000497539	RHOXF2B	P0C7M4	288 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PAX7	P23759	505 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ASIC1	P78348	528 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	GPS2	Q13227	327 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	KCNJ12	Q14500	433 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	TTC31	Q49AM3	519 aa	Predicted RBP	12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	RAD9B	Q6WBX8	426 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	DUSP9	Q99956	384 aa	Known RBP	12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	RHOXF2	Q9BQY4	288 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	KIAA1683	Q9H0B3	1180 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	VPS18	Q9P253	973 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PNMA2	Q9UL42	364 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	RABGAP1	Q9Y3P9	1069 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PHIP	Q8WWQ0	1821 aa		12.81	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ATP8B1	O43520	1251 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PHACTR2	O75167	634 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	CHMP4BP1	P59074	171 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PDE4D	Q08499	809 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	CDAN1	Q8IWY9	1227 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	GUF1	Q8N442	669 aa	Known RBP	12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PNKP	Q96T60	521 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	NUDT12	Q9BQG2	462 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	MRPL11	Q9Y3B7	192 aa	Known RBP	12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	LOXHD1	Q8IVV2	1947 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	FRMD3	A2A2Y4	597 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	WDR46	O15213	610 aa	Known RBP	12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	CTNND1	O60716	968 aa	Known RBP	12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	RBL2	Q08999	1139 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	RASA3	Q14644	834 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ZNF569	Q5MCW4	686 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	HAUS3	Q68CZ6	603 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	CENPP	Q6IPU0	288 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	FAM114A1	Q8IWE2	563 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	KIAA0895	Q8NCT3	520 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ANKZF1	Q9H8Y5	726 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	EHMT1	Q9H9B1	1298 aa		12.8	□□□□□ -0.36
SNRNP200-208	ENST00000497539	IGLV3-22	A0A075B6J6	115 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	MUT	P22033	750 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	TATDN2	Q93075	761 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	DNAJC19	Q96DA6	116 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PLIN2	Q99541	437 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ZNF112	Q9UJU3	913 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	VAV3	Q9UKW4	847 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	RPTOR	Q8N122	1335 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PITPNM2	Q9BZ72	1349 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	LGALS16	A8MUM7	142 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	AKR1B15	C9JRZ8	316 aa	Predicted RBP	12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	CCDC175	P0C221	793 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	HSD17B4	P51659	736 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PMS1	P54277	932 aa	Known RBP	12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	STK4	Q13043	487 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	IK	Q13123	557 aa	Predicted RBP	12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ECM1	Q16610	540 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	FOXR1	Q6PIV2	292 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	KCNK18	Q7Z418	384 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ERMN	Q8TAM6	284 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ZNF507	Q8TCN5	953 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	POLR3C	Q9BUI4	534 aa	Predicted RBP	12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	MAP3K20	Q9NYL2	800 aa	Known RBP	12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	FRMPD4	Q14CM0	1322 aa		12.79	□□□□□ -0.36
SNRNP200-208	ENST00000497539	GOLGA6L9	A6NEM1	432 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	RAD21	O60216	631 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ICAM1	P05362	532 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	GMPS	P49915	693 aa	Predicted RBP	12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	IRX1	P78414	480 aa	Predicted RBP	12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	KIF4B	Q2VIQ3	1234 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	SRL	Q86TD4	932 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	EXOC8	Q8IYI6	725 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	MSL3	Q8N5Y2	521 aa	Known RBP	12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	HOOK2	Q96ED9	719 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ABCB6	Q9NP58	842 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	FAM86B1	E9PN63	330 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	GCOM1	H8Y6P7	765 aa	Predicted RBP	12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	MFAP3L	O75121	409 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	FAM86B2	P0C5J1	330 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	POLR2M	P0CAP2	368 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	RPA1	P27694	616 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	CCT6A	P40227	531 aa	Known RBP	12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PRELP	P51888	382 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	LRRC63	Q05C16	580 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	USH1G	Q495M9	461 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	SRGAP1	Q7Z6B7	1085 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	CNGA4	Q8IV77	575 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	SPICE1	Q8N0Z3	855 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	KLHL23	Q8NBE8	558 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	IQCD	Q96DY2	449 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	TACO1	Q9BSH4	297 aa	Known RBP	12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	MAF1	Q9H063	256 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ADGRG1	Q9Y653	693 aa		12.78	□□□□□ -0.36
SNRNP200-208	ENST00000497539	SHTN1	A0MZ66	631 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ANKRD65	E5RJM6	399 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	FDX1	P10109	184 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	MAGEA9	P43362	315 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	SNAP25	P60880	206 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	SKIDA1	Q1XH10	827 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PACS2	Q86VP3	889 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	ACRBP	Q8NEB7	543 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	SLC5A5	Q92911	643 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	WDR18	Q9BV38	432 aa		12.77	□□□□□ -0.36
SNRNP200-208	ENST00000497539	PPP2R3B	Q9Y5P8	575 aa		12.77	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms