RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 PTRH1Q86Y79 214 aaKnown RBP8.5□□□□□ -1.05
SF3B1-212ENST00000496458 CISD2Q8N5K1 135 aaKnown RBP8.5□□□□□ -1.05
SF3B1-212ENST00000496458 CLIC6Q96NY7 704 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 TMEM209Q96SK2 561 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 HSPBP1Q9NZL4 362 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 COQ6Q9Y2Z9 468 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 MAN2B1O00754 1011 aa8.49□□□□□ -1.05
SF3B1-212ENST00000496458 PLD2O14939 933 aa8.49□□□□□ -1.05
SF3B1-212ENST00000496458 JAM2P57087 298 aa8.49□□□□□ -1.05
SF3B1-212ENST00000496458 NT5DC1Q5TFE4 455 aa8.49□□□□□ -1.05
SF3B1-212ENST00000496458 VASNQ6EMK4 673 aa8.49□□□□□ -1.05
SF3B1-212ENST00000496458 PROSER1Q86XN7 944 aa8.49□□□□□ -1.05
SF3B1-212ENST00000496458 NLGN4XQ8N0W4 816 aa8.49□□□□□ -1.05
SF3B1-212ENST00000496458 TRIM39Q9HCM9 518 aa8.49□□□□□ -1.05
SF3B1-212ENST00000496458 CROTQ9UKG9 612 aa8.49□□□□□ -1.05
SF3B1-212ENST00000496458 A0A0G2JLL6 359 aaPredicted RBP8.48□□□□□ -1.05
SF3B1-212ENST00000496458 TCRBV16S1A1N1A0A5B0 115 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 ACOT7O00154 380 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 KCNK3O14649 394 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 KCNQ2O43526 872 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 CKMP06732 381 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 RTP5Q14D33 572 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 PRR31Q5SQ13 230 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 PRAMEF18Q5VWM3 479 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 EP400NLQ6ZTU2 488 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 ADAMTS17Q8TE56 1095 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 PDGFDQ9GZP0 370 aaPredicted RBP8.48□□□□□ -1.05
SF3B1-212ENST00000496458 USP40Q9NVE5 1235 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 RIC8BQ9NVN3 520 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 RAPGEFL1Q9UHV5 662 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 ATP23Q9Y6H3 246 aa8.48□□□□□ -1.05
SF3B1-212ENST00000496458 ESYT3A0FGR9 886 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 ZNF561-AS1K7EIQ3 104 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 DDX3XO00571 662 aaKnown RBP eCLIP8.47□□□□□ -1.05
SF3B1-212ENST00000496458 PTPN1P18031 435 aaKnown RBP8.47□□□□□ -1.05
SF3B1-212ENST00000496458 FIGNQ5HY92 759 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 PHF19Q5T6S3 580 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 LCE4AQ5TA78 99 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 BTBD8Q5XKL5 378 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 CD276Q5ZPR3 534 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 ZNF761Q86XN6 746 aaPredicted RBP8.47□□□□□ -1.05
SF3B1-212ENST00000496458 C20orf173Q96LM9 149 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 CLUHP3Q96NS8 147 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 CELF4Q9BZC1 486 aaKnown RBP8.47□□□□□ -1.05
SF3B1-212ENST00000496458 ADAM7Q9H2U9 754 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 SMURF1Q9HCE7 757 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 TMEM260Q9NX78 707 aa8.47□□□□□ -1.05
SF3B1-212ENST00000496458 FAM90A27PA6NNH2 459 aa8.46□□□□□ -1.06
SF3B1-212ENST00000496458 PPP1R12AO14974 1030 aaPredicted RBP8.46□□□□□ -1.06
SF3B1-212ENST00000496458 CTSWP56202 376 aa8.46□□□□□ -1.06
SF3B1-212ENST00000496458 GJA9P57773 515 aa8.46□□□□□ -1.06
SF3B1-212ENST00000496458 RNPC3Q96LT9 517 aaKnown RBP8.46□□□□□ -1.06
SF3B1-212ENST00000496458 WRNIP1Q96S55 665 aa8.46□□□□□ -1.06
SF3B1-212ENST00000496458 DLL4Q9NR61 685 aa8.46□□□□□ -1.06
SF3B1-212ENST00000496458 USP35Q9P2H5 1018 aa8.46□□□□□ -1.06
SF3B1-212ENST00000496458 ASMTLO95671 621 aa8.45□□□□□ -1.06
SF3B1-212ENST00000496458 ZNF28P17035 718 aa8.45□□□□□ -1.06
SF3B1-212ENST00000496458 MLLT6P55198 1093 aaPredicted RBP8.45□□□□□ -1.06
SF3B1-212ENST00000496458 LACTBP83111 547 aaPredicted RBP8.45□□□□□ -1.06
SF3B1-212ENST00000496458 SKIDA1Q1XH10 827 aa8.45□□□□□ -1.06
SF3B1-212ENST00000496458 RGL3Q3MIN7 710 aa8.45□□□□□ -1.06
SF3B1-212ENST00000496458 FNDC3BQ53EP0 1204 aaKnown RBP8.45□□□□□ -1.06
SF3B1-212ENST00000496458 MCTP2Q6DN12 878 aa8.45□□□□□ -1.06
SF3B1-212ENST00000496458 ABHD17CQ6PCB6 329 aa8.45□□□□□ -1.06
SF3B1-212ENST00000496458 DTX3Q8N9I9 347 aa8.45□□□□□ -1.06
SF3B1-212ENST00000496458 KRTAP4-8A0A0G2JLE6 195 aa8.44□□□□□ -1.06
SF3B1-212ENST00000496458 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-212ENST00000496458 NOBOXO60393 691 aa8.44□□□□□ -1.06
SF3B1-212ENST00000496458 CYP7B1O75881 506 aa8.44□□□□□ -1.06
SF3B1-212ENST00000496458 PFKPQ01813 784 aa8.44□□□□□ -1.06
SF3B1-212ENST00000496458 LILRA6Q6PI73 481 aa8.44□□□□□ -1.06
SF3B1-212ENST00000496458 IGSF22Q8N9C0 903 aa8.44□□□□□ -1.06
SF3B1-212ENST00000496458 L2HGDHQ9H9P8 463 aa8.44□□□□□ -1.06
SF3B1-212ENST00000496458 RTEL1Q9NZ71 1219 aa8.44□□□□□ -1.06
SF3B1-212ENST00000496458 ZNF839A8K0R7 811 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 ENO2P09104 434 aaPredicted RBP8.43□□□□□ -1.06
SF3B1-212ENST00000496458 KCNA6P17658 529 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 GJA4P35212 333 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 IL13P35225 146 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 GLRBP48167 497 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 FAM26FQ5R3K3 315 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 CPZQ66K79 652 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 TRMT10BQ6PF06 316 aaKnown RBP8.43□□□□□ -1.06
SF3B1-212ENST00000496458 OVCH1Q7RTY7 1134 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 FRMD5Q7Z6J6 570 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 TXNDC5Q8NBS9 432 aaKnown RBP8.43□□□□□ -1.06
SF3B1-212ENST00000496458 ZCCHC14Q8WYQ9 949 aaKnown RBP8.43□□□□□ -1.06
SF3B1-212ENST00000496458 SLC39A2Q9NP94 309 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 ZFP69BQ9UJL9 534 aa8.43□□□□□ -1.06
SF3B1-212ENST00000496458 PRAMEF25A6NGN4 478 aa8.42□□□□□ -1.06
SF3B1-212ENST00000496458 DBPQ10586 325 aaPredicted RBP8.42□□□□□ -1.06
SF3B1-212ENST00000496458 NFIXQ14938 502 aa8.42□□□□□ -1.06
SF3B1-212ENST00000496458 HHIPL2Q6UWX4 724 aa8.42□□□□□ -1.06
SF3B1-212ENST00000496458 DDX1Q92499 740 aaKnown RBP8.42□□□□□ -1.06
SF3B1-212ENST00000496458 ARHGAP20Q9P2F6 1191 aa8.42□□□□□ -1.06
SF3B1-212ENST00000496458 SCDO00767 359 aa8.41□□□□□ -1.06
SF3B1-212ENST00000496458 OPA1O60313 960 aa8.41□□□□□ -1.06
SF3B1-212ENST00000496458 CLASP2O75122 1294 aaKnown RBP8.41□□□□□ -1.06
SF3B1-212ENST00000496458 DNAJC8O75937 253 aaPredicted RBP8.41□□□□□ -1.06
SF3B1-212ENST00000496458 FBXO21O94952 628 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms