RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 LONRF3Q496Y0 759 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 TMEM119Q4V9L6 283 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 RRAGBQ5VZM2 374 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 KRBA2Q6ZNG9 492 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 MIER3Q7Z3K6 550 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 DNAJC5GQ8N7S2 189 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 RDM1Q8NG50 284 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 NEK9Q8TD19 979 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 ZNF296Q8WUU4 475 aaPredicted RBP12.8□□□□□ -0.36
MCF2L-231ENST00000494043 CDK5RAP3Q96JB5 506 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 EIF2AK1Q9BQI3 630 aaKnown RBP12.8□□□□□ -0.36
MCF2L-231ENST00000494043 POLR3CQ9BUI4 534 aaPredicted RBP12.8□□□□□ -0.36
MCF2L-231ENST00000494043 NUP62CLQ9H1M0 184 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 BCAS3Q9H6U6 928 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 SLC9A2Q9UBY0 812 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 SRRDQ9UH36 339 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 USP25Q9UHP3 1055 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 DDX41Q9UJV9 622 aaKnown RBP12.8□□□□□ -0.36
MCF2L-231ENST00000494043 ZHX1Q9UKY1 873 aaPredicted RBP12.8□□□□□ -0.36
MCF2L-231ENST00000494043 PCNTO95613 3336 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 POTEB3A0JP26 581 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 MED24O75448 989 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 FARP2O94887 1054 aaPredicted RBP12.79□□□□□ -0.36
MCF2L-231ENST00000494043 GGPS1O95749 300 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 SLFN14P0C7P3 912 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 SPATA31C1P0DKV0 1188 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 TXNP10599 105 aaKnown RBP12.79□□□□□ -0.36
MCF2L-231ENST00000494043 HOXD10P28358 340 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 ECM1Q16610 540 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 LY6KQ17RY6 165 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 NAALADL2Q58DX5 795 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 POTEBQ6S5H4 581 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 METTL7BQ6UX53 244 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 CYFIP1Q7L576 1253 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 SMAP1Q8IYB5 467 aaPredicted RBP12.79□□□□□ -0.36
MCF2L-231ENST00000494043 TRMT44Q8IYL2 757 aaKnown RBP12.79□□□□□ -0.36
MCF2L-231ENST00000494043 CEP57L1Q8IYX8 460 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 CNNM3Q8NE01 707 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 PLIN2Q99541 437 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 HSD17B14Q9BPX1 270 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 NT5C3AQ9H0P0 336 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 TUFT1Q9NNX1 390 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 WBP1LQ9NX94 342 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 STK17AQ9UEE5 414 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 SERTAD1Q9UHV2 236 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 CASP8AP2Q9UKL3 1982 aa12.79□□□□□ -0.36
MCF2L-231ENST00000494043 POTEFA5A3E0 1075 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 SORBS3O60504 671 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 MUTP22033 750 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 CYP2C19P33261 490 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 ADCYAP1R1P41586 468 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 ACTR2P61160 394 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 CYP4A11Q02928 519 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 ARHGEF6Q15052 776 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 CAMK4Q16566 473 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 CELF3Q5SZQ8 465 aaKnown RBP12.78□□□□□ -0.36
MCF2L-231ENST00000494043 PDXDC2PQ6P474 469 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 POTEGQ6S5H5 508 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 CATSPER3Q86XQ3 398 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 ELOA2Q8IYF1 753 aaPredicted RBP12.78□□□□□ -0.36
MCF2L-231ENST00000494043 LRRC15Q8TF66 581 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 TRIB2Q92519 343 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 DYDC2Q96IM9 177 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 TNMDQ9H2S6 317 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 CUEDC2Q9H467 287 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 MAGEF1Q9HAY2 307 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 RGL1Q9NZL6 768 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 NRBP1Q9UHY1 535 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 TSKSQ9UJT2 592 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 SAMM50Q9Y512 469 aa12.78□□□□□ -0.36
MCF2L-231ENST00000494043 CTAGE5O15320 804 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 SLITRK3O94933 977 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 P4HBP07237 508 aaKnown RBP12.77□□□□□ -0.37
MCF2L-231ENST00000494043 PSAPP07602 524 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 SUPT20HL2P0C7V6 817 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 ZNF865P0CJ78 1059 aaPredicted RBP12.77□□□□□ -0.37
MCF2L-231ENST00000494043 SP4Q02446 784 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 ARHGAP1Q07960 439 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 CTTNQ14247 550 aaKnown RBP12.77□□□□□ -0.37
MCF2L-231ENST00000494043 CCDC144BQ3MJ40 725 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 ZSCAN23Q3MJ62 389 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 PRAMEF19Q5SWL8 479 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 TMEM63BQ5T3F8 832 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 MFSD14CQ5VZR4 134 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 IQSEC1Q6DN90 963 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 KANK3Q6NY19 840 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 MIS18BP1Q6P0N0 1132 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 ABHD15Q6UXT9 468 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 KCNK18Q7Z418 384 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 SH3RF1Q7Z6J0 888 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 DHX37Q8IY37 1157 aaKnown RBP12.77□□□□□ -0.37
MCF2L-231ENST00000494043 KCTD17Q8N5Z5 321 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 BANK1Q8NDB2 785 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 RAD54LQ92698 747 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 COPS5Q92905 334 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 CCDC34Q96HJ3 373 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 LXNQ9BS40 222 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 GZF1Q9H116 711 aaPredicted RBP12.77□□□□□ -0.37
MCF2L-231ENST00000494043 MLXIPQ9HAP2 919 aa12.77□□□□□ -0.37
MCF2L-231ENST00000494043 BLOC1S4Q9NUP1 217 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms