RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 SECISBP2LQ93073 1101 aaKnown RBP13.77□□□□□ -0.21
HMGN1-220ENST00000492280 EIF3CQ99613 913 aaKnown RBP13.77□□□□□ -0.21
HMGN1-220ENST00000492280 NUP58Q9BVL2 599 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 RUSC1Q9BVN2 902 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.77□□□□□ -0.21
HMGN1-220ENST00000492280 PRR12Q9ULL5 1215 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 PCDHA2Q9Y5H9 948 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 SHTN1A0MZ66 631 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 CLIC2O15247 247 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 TLR2O60603 784 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 ZNF76P36508 570 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 VAV2P52735 878 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 SLC12A3P55017 1021 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 KIF5AQ12840 1032 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 RAPGEF1Q13905 1077 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 SPA17Q15506 151 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 RBM26Q5T8P6 1007 aaKnown RBP13.77□□□□□ -0.21
HMGN1-220ENST00000492280 PKNOX2Q96KN3 472 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 ZNF277Q9NRM2 450 aaPredicted RBP13.77□□□□□ -0.21
HMGN1-220ENST00000492280 EMILIN3Q9NT22 766 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 PCDHA13Q9Y5I0 950 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 ZNF646O15015 1829 aaPredicted RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 CCDC151A5D8V7 595 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 NOL4O94818 638 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 MYBL2P10244 700 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 GCFC2P16383 781 aaKnown RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 WHAMMP3Q1A5X7 153 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 MKL1Q969V6 931 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 TMEM39BQ9GZU3 492 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 BMP2KQ9NSY1 1161 aaPredicted RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 PACSIN2Q9UNF0 486 aaPredicted RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 DDX39AO00148 427 aaKnown RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 NR2F2P24468 414 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 NAP1L1P55209 391 aaKnown RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 FKBP3Q00688 224 aaKnown RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 EN1Q05925 392 aaPredicted RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 ADAM9Q13443 819 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 TBC1D10BQ4KMP7 808 aaPredicted RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 DCAF17Q5H9S7 520 aaPredicted RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 UTP14CQ5TAP6 766 aaKnown RBP13.76□□□□□ -0.21
HMGN1-220ENST00000492280 CCDC65Q8IXS2 484 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 FAM133AQ8N9E0 248 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 SH2D3AQ9BRG2 576 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 PACSIN1Q9BY11 444 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 NT5C3AQ9H0P0 336 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 GOLPH3Q9H4A6 298 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 MYO1AQ9UBC5 1043 aa13.76□□□□□ -0.21
HMGN1-220ENST00000492280 KDM3AQ9Y4C1 1321 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 HOXD13P35453 343 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 CASP4P49662 377 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 PDXDC1Q6P996 788 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 MSANTD4Q8NCY6 345 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 CRYGNQ8WXF5 182 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 WDR18Q9BV38 432 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 KCTD10Q9H3F6 313 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.75□□□□□ -0.21
HMGN1-220ENST00000492280 RNASE9P60153 205 aaKnown RBP13.75□□□□□ -0.21
HMGN1-220ENST00000492280 COBLL1Q53SF7 1204 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 TCERG1LQ5VWI1 586 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 HGSNATQ68CP4 663 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 RETREG2Q8NC44 543 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 FBXO41Q8TF61 875 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 HDAC7Q8WUI4 952 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 SERPINA10Q9UK55 444 aa13.75□□□□□ -0.21
HMGN1-220ENST00000492280 LRRIQ3A6PVS8 624 aaPredicted RBP13.74□□□□□ -0.21
HMGN1-220ENST00000492280 SLC9A1P19634 815 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 GIT2Q14161 759 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 GJB7Q6PEY0 223 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 MAEAQ7L5Y9 396 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 FLAD1Q8NFF5 587 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.74□□□□□ -0.21
HMGN1-220ENST00000492280 SH2D4AQ9H788 454 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 COL4A5P29400 1685 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 A0A1W2PQJ5 194 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 MAGEA1P43355 309 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 TNNT3P45378 269 aaPredicted RBP13.74□□□□□ -0.21
HMGN1-220ENST00000492280 ZC2HC1CQ53FD0 456 aaPredicted RBP13.74□□□□□ -0.21
HMGN1-220ENST00000492280 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.74□□□□□ -0.21
HMGN1-220ENST00000492280 TPH2Q8IWU9 490 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 CCDC170Q8IYT3 715 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 MS4A14Q96JA4 679 aa13.74□□□□□ -0.21
HMGN1-220ENST00000492280 RXRBP28702 533 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 PPP1R2P41236 205 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 EPS15P42566 896 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 USP11P51784 963 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 SLC7A5Q01650 507 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 PLS1Q14651 629 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 COG2Q14746 738 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 HYIQ5T013 277 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 ZNF772Q68DY9 489 aaPredicted RBP13.73□□□□□ -0.21
HMGN1-220ENST00000492280 RIN2Q8WYP3 895 aaPredicted RBP13.73□□□□□ -0.21
HMGN1-220ENST00000492280 AJAP1Q9UKB5 411 aaPredicted RBP13.73□□□□□ -0.21
HMGN1-220ENST00000492280 VAV3Q9UKW4 847 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 RAB21Q9UL25 225 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 GCNT3O95395 438 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 NMT1P30419 496 aaKnown RBP13.73□□□□□ -0.21
HMGN1-220ENST00000492280 SREBF1P36956 1147 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 STAT2P52630 851 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 KCNH2Q12809 1159 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 BRD3Q15059 726 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms