RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 NEK1Q96PY6 1258 aa16.06■□□□□ 0.16
EXOSC3-207ENST00000490516 SEC62Q99442 399 aaKnown RBP16.06■□□□□ 0.16
EXOSC3-207ENST00000490516 TMEM47Q9BQJ4 181 aa16.06■□□□□ 0.16
EXOSC3-207ENST00000490516 NACAP1Q9BZK3 213 aa16.06■□□□□ 0.16
EXOSC3-207ENST00000490516 NAPBQ9H115 298 aa16.06■□□□□ 0.16
EXOSC3-207ENST00000490516 MFSD1Q9H3U5 465 aa16.06■□□□□ 0.16
EXOSC3-207ENST00000490516 CDH22Q9UJ99 828 aa16.06■□□□□ 0.16
EXOSC3-207ENST00000490516 SUPT16HQ9Y5B9 1047 aaKnown RBP16.06■□□□□ 0.16
EXOSC3-207ENST00000490516 BAHCC1Q9P281 2608 aa16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 H3BRB1 525 aa16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 RAB11FIP3O75154 756 aa16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 EIF3JO75822 258 aaKnown RBP16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 GGPS1O95749 300 aa16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 CHRNA1P02708 482 aa16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 PAN2Q504Q3 1202 aaKnown RBP16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 CELF3Q5SZQ8 465 aaKnown RBP16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 ARHGEF16Q5VV41 709 aa16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 SIRT2Q8IXJ6 389 aa16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 TUT1Q9H6E5 874 aaKnown RBP16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 SETD4Q9NVD3 440 aa16.05■□□□□ 0.16
EXOSC3-207ENST00000490516 LOXHD1Q8IVV2 1947 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 NR3C2P08235 984 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 PDHBP11177 359 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 CLCN5P51795 746 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 SP2Q02086 613 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 ANGPT1Q15389 498 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 DUSP6Q16828 381 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 SYCE2Q6PIF2 218 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 CMTR2Q8IYT2 770 aaKnown RBP16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 CPVLQ9H3G5 476 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 EHMT1Q9H9B1 1298 aa16.04■□□□□ 0.16
EXOSC3-207ENST00000490516 CFAP47Q6ZTR5 3102 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 C2CD4DB7Z1M9 353 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 PI15O43692 258 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 LGALS2P05162 132 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 TOP1P11387 765 aaKnown RBP16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 TECP42680 631 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 ZNF543Q08ER8 600 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 LPIN1Q14693 890 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 CWF19L1Q69YN2 538 aaKnown RBP16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 ANKRD54Q6NXT1 300 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 FLCNQ8NFG4 579 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 LINC01599Q8WXQ3 324 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 BCAS3Q9H6U6 928 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 PXMP2Q9NR77 195 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 NR2E1Q9Y466 385 aa16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 MAP1BP46821 2468 aaKnown RBP16.03■□□□□ 0.16
EXOSC3-207ENST00000490516 SMARCA5O60264 1052 aaPredicted RBP16.02■□□□□ 0.16
EXOSC3-207ENST00000490516 LMNAP02545 664 aaKnown RBP16.02■□□□□ 0.16
EXOSC3-207ENST00000490516 ASGR2P07307 311 aa16.02■□□□□ 0.16
EXOSC3-207ENST00000490516 GATMP50440 423 aa16.02■□□□□ 0.16
EXOSC3-207ENST00000490516 GPKOWQ92917 476 aaPredicted RBP eCLIP16.02■□□□□ 0.16
EXOSC3-207ENST00000490516 DLL3Q9NYJ7 618 aa16.02■□□□□ 0.16
EXOSC3-207ENST00000490516 FNDC1Q4ZHG4 1894 aaPredicted RBP16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 ZFYP08048 801 aaPredicted RBP16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 GOLGA8HP0CJ92 632 aa16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 MYCLP12524 364 aaPredicted RBP16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 UBA1P22314 1058 aaKnown RBP16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 ERVFC1P60507 584 aa16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 ARHGAP4P98171 946 aa16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 KCNC3Q14003 757 aa16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 LLGL2Q6P1M3 1020 aa16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 CCDC105Q8IYK2 499 aa16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 CRIPAKQ8N1N5 446 aa16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 ZFP91Q96JP5 570 aaPredicted RBP16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 CDCA3Q99618 268 aaPredicted RBP16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 UBA5Q9GZZ9 404 aa16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 CHD6Q8TD26 2715 aa16.01■□□□□ 0.15
EXOSC3-207ENST00000490516 SPTBN2O15020 2390 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 ABCB11O95342 1321 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 FOXP2O15409 715 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 HMMRO75330 724 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 GNAT1P11488 350 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 ADAM17P78536 824 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 MGAT3Q09327 533 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 TSHZ3Q63HK5 1081 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 TMEM184AQ6ZMB5 413 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 RUFY4Q6ZNE9 571 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 RTN4RL1Q86UN2 441 aaPredicted RBP16■□□□□ 0.15
EXOSC3-207ENST00000490516 PANK1Q8TE04 598 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 LMBR1Q8WVP7 490 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 POMKQ9H5K3 350 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 MLXIPQ9HAP2 919 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 ECHDC1Q9NTX5 307 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 R4GN57 208 aa16■□□□□ 0.15
EXOSC3-207ENST00000490516 OTOGLQ3ZCN5 2332 aa15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 NPR3P17342 541 aa15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 AOC1P19801 751 aa15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 CDC37Q16543 378 aaPredicted RBP15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 TRIM50Q86XT4 487 aa15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 MCF2L2Q86YR7 1114 aa15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 DTWD2Q8NBA8 298 aa15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 HINFPQ9BQA5 517 aa15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 MAF1Q9H063 256 aa15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 TOMM22Q9NS69 142 aa15.99■□□□□ 0.15
EXOSC3-207ENST00000490516 CCDC171Q6TFL3 1326 aa15.98■□□□□ 0.15
EXOSC3-207ENST00000490516 FSD2A1L4K1 749 aa15.98■□□□□ 0.15
EXOSC3-207ENST00000490516 ORC4O43929 436 aa15.98■□□□□ 0.15
EXOSC3-207ENST00000490516 SRGAP2BP0DMP2 458 aa15.98■□□□□ 0.15
EXOSC3-207ENST00000490516 SNHG28P0DPA3 235 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms