RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 SSU72Q9NP77 194 aaKnown RBP7.9□□□□□ -1.14
PRPF40A-210ENST00000489741 COPRSQ9NQ92 184 aa7.9□□□□□ -1.14
PRPF40A-210ENST00000489741 PICK1Q9NRD5 415 aa7.9□□□□□ -1.14
PRPF40A-210ENST00000489741 TMOD2Q9NZR1 351 aa7.9□□□□□ -1.14
PRPF40A-210ENST00000489741 NOB1Q9ULX3 412 aaKnown RBP7.9□□□□□ -1.14
PRPF40A-210ENST00000489741 PTCH2Q9Y6C5 1203 aa7.9□□□□□ -1.14
PRPF40A-210ENST00000489741 ATRNL1Q5VV63 1379 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 GAKO14976 1311 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 ADGRA2Q96PE1 1338 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 CYP26A1O43174 497 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 UBTFL1P0CB47 393 aaPredicted RBP7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 FOSL1P15407 271 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 SPINK2P20155 84 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 BMP6P22004 513 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 CTGFP29279 349 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 IL15P40933 162 aaPredicted RBP7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 PHKA1P46020 1223 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 ATP2B3Q16720 1220 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 ZC3H12AQ5D1E8 599 aaKnown RBP7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 PCNX4Q63HM2 1172 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 DNAJC14Q6Y2X3 702 aaPredicted RBP7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 ZNF765Q7L2R6 523 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 ANKRD23Q86SG2 305 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 NPAS4Q8IUM7 802 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 ARHGAP45Q92619 1136 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 GATA6Q92908 595 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 IDI2Q9BXS1 227 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 LRRC4CQ9HCJ2 640 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 C1GALT1Q9NS00 363 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 SMC4Q9NTJ3 1288 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 RNF19AQ9NV58 838 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 USP40Q9NVE5 1235 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 DENND2AQ9ULE3 1009 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 PA2G4Q9UQ80 394 aaKnown RBP7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 AK5Q9Y6K8 562 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 ECM29Q5VYK3 1845 aa7.89□□□□□ -1.15
PRPF40A-210ENST00000489741 PDS5AQ29RF7 1337 aaKnown RBP7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 CXCL11O14625 94 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 ENTPD3O75355 529 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 RARSP54136 660 aaKnown RBP7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 PRMT2P55345 433 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 TIMM10P62072 90 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 ERVK-24P63145 666 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 TCP10Q12799 353 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 CDK5R2Q13319 367 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 MTX1Q13505 466 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 CCDC85BQ15834 202 aaPredicted RBP7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 SEZ6L2Q6UXD5 910 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 SV2BQ7L1I2 683 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 DTX1Q86Y01 620 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 GCC1Q96CN9 775 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 MEIS3Q99687 375 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 API5Q9BZZ5 524 aaKnown RBP7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 SIL1Q9H173 461 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 GNL3LQ9NVN8 582 aaKnown RBP7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 HDAC5Q9UQL6 1122 aa7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 LRRFIP2Q9Y608 721 aaKnown RBP7.88□□□□□ -1.15
PRPF40A-210ENST00000489741 SZT2Q5T011 3432 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 RFX7Q2KHR2 1363 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 PDHXO00330 501 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 WDHD1O75717 1129 aaPredicted RBP7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 ADORA1P30542 326 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 PSMD2Q13200 908 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 SLC9C1Q4G0N8 1177 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 HABP4Q5JVS0 413 aaKnown RBP7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 RASIP1Q5U651 963 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 ZNF384Q8TF68 577 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 PARP2Q9UGN5 583 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 PCDHA4Q9UN74 947 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 CYP8B1Q9UNU6 501 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 AFG3L2Q9Y4W6 797 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 CEP290O15078 2479 aa7.87□□□□□ -1.15
PRPF40A-210ENST00000489741 GPR75-ASB3A0A0A6YYF3 556 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 DDTLA6NHG4 134 aaPredicted RBP7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 DCDC2CA8MYV0 355 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 PSMC4P43686 418 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 RGS3P49796 1198 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 RHBDL3P58872 404 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 RASGRF1Q13972 1273 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 KIF22Q14807 665 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 CYP27C1Q4G0S4 372 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 UBE2Q1Q7Z7E8 422 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 ZGPATQ8N5A5 531 aaKnown RBP7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 RNF214Q8ND24 703 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 SH3TC2Q8TF17 1288 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 ISL2Q96A47 359 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 DDX4Q9NQI0 724 aaKnown RBP7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 CACNA2D2Q9NY47 1150 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 SRRDQ9UH36 339 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 CPA4Q9UI42 421 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 PCOLCE2Q9UKZ9 415 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 ARAP2Q8WZ64 1704 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 OTOFQ9HC10 1997 aa7.86□□□□□ -1.15
PRPF40A-210ENST00000489741 A0A0G2JLL6 359 aaPredicted RBP7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 A0A1B0GUL7 405 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 CTNND1O60716 968 aaKnown RBP7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 WNT11O96014 354 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 GNAI3P08754 354 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms