RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 TRIOBPQ9H2D6 2365 aa21.15■□□□□ 0.98
PTCD3-217ENST00000488801 RANBP2P49792 3224 aaKnown RBP21.15■□□□□ 0.98
PTCD3-217ENST00000488801 IGKV6D-21A0A0A0MT36 114 aa21.15■□□□□ 0.98
PTCD3-217ENST00000488801 WNT7AO00755 349 aa21.15■□□□□ 0.98
PTCD3-217ENST00000488801 TCF7P36402 384 aaPredicted RBP21.15■□□□□ 0.98
PTCD3-217ENST00000488801 PSEN2P49810 448 aa21.15■□□□□ 0.98
PTCD3-217ENST00000488801 CTAGE1Q96RT6 745 aa21.15■□□□□ 0.98
PTCD3-217ENST00000488801 PCYT2Q99447 389 aa21.15■□□□□ 0.98
PTCD3-217ENST00000488801 ZNF577Q9BSK1 485 aa21.15■□□□□ 0.98
PTCD3-217ENST00000488801 TBC1D22BQ9NU19 505 aa21.15■□□□□ 0.98
PTCD3-217ENST00000488801 H0YGN5 161 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 PQBP1O60828 265 aaKnown RBP21.14■□□□□ 0.97
PTCD3-217ENST00000488801 PSMD10O75832 226 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 CLTBP09497 229 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 ACTR2P61160 394 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 MFSD10Q14728 455 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 SAFBQ15424 915 aaKnown RBP eCLIP21.14■□□□□ 0.97
PTCD3-217ENST00000488801 LETM2Q2VYF4 491 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 PRPF38BQ5VTL8 546 aaKnown RBP21.14■□□□□ 0.97
PTCD3-217ENST00000488801 TRIM50Q86XT4 487 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 SEPT1Q8WYJ6 367 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 RIT2Q99578 217 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 NAP1L4Q99733 375 aaKnown RBP21.14■□□□□ 0.97
PTCD3-217ENST00000488801 DDX25Q9UHL0 483 aaKnown RBP21.14■□□□□ 0.97
PTCD3-217ENST00000488801 SMC3Q9UQE7 1217 aa21.14■□□□□ 0.97
PTCD3-217ENST00000488801 H3BRB1 525 aa21.13■□□□□ 0.97
PTCD3-217ENST00000488801 KIAA0355O15063 1070 aa21.13■□□□□ 0.97
PTCD3-217ENST00000488801 B4GALT4O60513 344 aa21.13■□□□□ 0.97
PTCD3-217ENST00000488801 SP4Q02446 784 aa21.13■□□□□ 0.97
PTCD3-217ENST00000488801 KIAA0753Q2KHM9 967 aa21.13■□□□□ 0.97
PTCD3-217ENST00000488801 ZNF746Q6NUN9 644 aaPredicted RBP21.13■□□□□ 0.97
PTCD3-217ENST00000488801 SH3RF1Q7Z6J0 888 aa21.13■□□□□ 0.97
PTCD3-217ENST00000488801 NOSTRINQ8IVI9 506 aa21.13■□□□□ 0.97
PTCD3-217ENST00000488801 VTI1AQ96AJ9 217 aa21.13■□□□□ 0.97
PTCD3-217ENST00000488801 TUT1Q9H6E5 874 aaKnown RBP21.13■□□□□ 0.97
PTCD3-217ENST00000488801 GTF2IRD1Q9UHL9 959 aa21.13■□□□□ 0.97
PTCD3-217ENST00000488801 TRIM43BA6NCK2 446 aa21.12■□□□□ 0.97
PTCD3-217ENST00000488801 DCDC2CA8MYV0 355 aa21.12■□□□□ 0.97
PTCD3-217ENST00000488801 TBX3O15119 743 aa21.12■□□□□ 0.97
PTCD3-217ENST00000488801 KRT76Q01546 638 aa21.12■□□□□ 0.97
PTCD3-217ENST00000488801 ABHD15Q6UXT9 468 aa21.12■□□□□ 0.97
PTCD3-217ENST00000488801 TRIM43Q96BQ3 446 aaPredicted RBP21.12■□□□□ 0.97
PTCD3-217ENST00000488801 PTPRSQ13332 1948 aa21.12■□□□□ 0.97
PTCD3-217ENST00000488801 HIC1Q14526 733 aa21.11■□□□□ 0.97
PTCD3-217ENST00000488801 POTEDQ86YR6 584 aa21.11■□□□□ 0.97
PTCD3-217ENST00000488801 SMAP1Q8IYB5 467 aaPredicted RBP21.11■□□□□ 0.97
PTCD3-217ENST00000488801 AFAP1L1Q8TED9 768 aa21.11■□□□□ 0.97
PTCD3-217ENST00000488801 PPP1R13LQ8WUF5 828 aa21.11■□□□□ 0.97
PTCD3-217ENST00000488801 HAS1Q92839 578 aa21.11■□□□□ 0.97
PTCD3-217ENST00000488801 PRO3102Q9H379 93 aa21.11■□□□□ 0.97
PTCD3-217ENST00000488801 ZMYND8Q9ULU4 1186 aaPredicted RBP21.11■□□□□ 0.97
PTCD3-217ENST00000488801 MICAL3Q7RTP6 2002 aa21.11■□□□□ 0.97
PTCD3-217ENST00000488801 IGSF9BQ9UPX0 1349 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 GBF1Q92538 1859 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 DDX39AO00148 427 aaKnown RBP21.1■□□□□ 0.97
PTCD3-217ENST00000488801 CCNT1O60563 726 aaKnown RBP21.1■□□□□ 0.97
PTCD3-217ENST00000488801 SUPT20HL2P0C7V6 817 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 ITGB8P26012 769 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 CCDC60Q8IWA6 550 aaPredicted RBP21.1■□□□□ 0.97
PTCD3-217ENST00000488801 GJA10Q969M2 543 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 UIMC1Q96RL1 719 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 TRPV6Q9H1D0 765 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 TRMT13Q9NUP7 481 aaKnown RBP21.1■□□□□ 0.97
PTCD3-217ENST00000488801 HDAC6Q9UBN7 1215 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 VAV3Q9UKW4 847 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 ZNF215Q9UL58 517 aaPredicted RBP21.1■□□□□ 0.97
PTCD3-217ENST00000488801 TCHHQ07283 1943 aa21.1■□□□□ 0.97
PTCD3-217ENST00000488801 TLR3O15455 904 aaKnown RBP21.09■□□□□ 0.97
PTCD3-217ENST00000488801 SYN1P17600 705 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 TRAPPC10P48553 1259 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 ADAM17P78536 824 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 ORC2Q13416 577 aaPredicted RBP21.09■□□□□ 0.97
PTCD3-217ENST00000488801 LRCH2Q5VUJ6 765 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 GDF6Q6KF10 455 aaPredicted RBP21.09■□□□□ 0.97
PTCD3-217ENST00000488801 PLPPR4Q7Z2D5 763 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 HSCBQ8IWL3 235 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 FAM20AQ96MK3 541 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 TEKT3Q9BXF9 490 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 SMARCAD1Q9H4L7 1026 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 ERAP1Q9NZ08 941 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 PCDH10Q9P2E7 1040 aa21.09■□□□□ 0.97
PTCD3-217ENST00000488801 GAS7O60861 476 aa21.08■□□□□ 0.97
PTCD3-217ENST00000488801 SMIM10L2AP0DMW4 78 aa21.08■□□□□ 0.97
PTCD3-217ENST00000488801 SMIM10L2BP0DMW5 78 aa21.08■□□□□ 0.97
PTCD3-217ENST00000488801 RBL2Q08999 1139 aa21.08■□□□□ 0.97
PTCD3-217ENST00000488801 SPIRE1Q08AE8 756 aa21.08■□□□□ 0.97
PTCD3-217ENST00000488801 PPP2R5CQ13362 524 aa21.08■□□□□ 0.97
PTCD3-217ENST00000488801 UTP14CQ5TAP6 766 aaKnown RBP21.08■□□□□ 0.97
PTCD3-217ENST00000488801 RDM1Q8NG50 284 aa21.08■□□□□ 0.97
PTCD3-217ENST00000488801 GDF15Q99988 308 aa21.08■□□□□ 0.97
PTCD3-217ENST00000488801 NOC4LQ9BVI4 516 aaKnown RBP21.08■□□□□ 0.97
PTCD3-217ENST00000488801 UNC45AQ9H3U1 944 aa21.08■□□□□ 0.97
PTCD3-217ENST00000488801 WDR64B1ANS9 1081 aa21.07■□□□□ 0.96
PTCD3-217ENST00000488801 SLC26A2P50443 739 aa21.07■□□□□ 0.96
PTCD3-217ENST00000488801 TOB1P50616 345 aaPredicted RBP21.07■□□□□ 0.96
PTCD3-217ENST00000488801 FAM47CQ5HY64 1035 aa21.07■□□□□ 0.96
PTCD3-217ENST00000488801 LARP1BQ659C4 914 aaKnown RBP21.07■□□□□ 0.96
PTCD3-217ENST00000488801 C7orf31Q8N865 590 aa21.07■□□□□ 0.96
PTCD3-217ENST00000488801 MTMR9Q96QG7 549 aa21.07■□□□□ 0.96
PTCD3-217ENST00000488801 RNPEPQ9H4A4 650 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms