RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 HERC4Q5GLZ8 1057 aaPredicted RBP17.81■□□□□ 0.44
MCF2L-228ENST00000487354 CWC27Q6UX04 472 aaKnown RBP17.81■□□□□ 0.44
MCF2L-228ENST00000487354 RUFY4Q6ZNE9 571 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 EP400NLQ6ZTU2 488 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 FIBCD1Q8N539 461 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 LINC01599Q8WXQ3 324 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 ZNF689Q96CS4 500 aaPredicted RBP17.81■□□□□ 0.44
MCF2L-228ENST00000487354 IL17RAQ96F46 866 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 PIGSQ96S52 555 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 PHOX2BQ99453 314 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 DSCC1Q9BVC3 393 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 RIOX1Q9H6W3 641 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 FAM50BQ9Y247 325 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 GCOM1H8Y6P7 765 aaPredicted RBP17.8■□□□□ 0.44
MCF2L-228ENST00000487354 POLR2MP0CAP2 368 aa17.8■□□□□ 0.44
MCF2L-228ENST00000487354 RRP1P56182 461 aaKnown RBP17.8■□□□□ 0.44
MCF2L-228ENST00000487354 IFIT1BQ5T764 474 aaKnown RBP17.8■□□□□ 0.44
MCF2L-228ENST00000487354 CYFIP1Q7L576 1253 aa17.8■□□□□ 0.44
MCF2L-228ENST00000487354 FCHSD1Q86WN1 690 aa17.8■□□□□ 0.44
MCF2L-228ENST00000487354 PLEKHM2Q8IWE5 1019 aa17.8■□□□□ 0.44
MCF2L-228ENST00000487354 USP26Q9BXU7 913 aa17.8■□□□□ 0.44
MCF2L-228ENST00000487354 LMAN2LQ9H0V9 348 aa17.8■□□□□ 0.44
MCF2L-228ENST00000487354 SENP2Q9HC62 589 aa17.8■□□□□ 0.44
MCF2L-228ENST00000487354 MMP1P03956 469 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 RB1P06400 928 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 GHRP10912 638 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 SMAD4Q13485 552 aaKnown RBP17.79■□□□□ 0.44
MCF2L-228ENST00000487354 LPIN1Q14693 890 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 GRM4Q14833 912 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 HOMER1Q86YM7 354 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 RNF135Q8IUD6 432 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 CRIPAKQ8N1N5 446 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 PRSS33Q8NF86 280 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 MSLNLQ96KJ4 702 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 UBAC1Q9BSL1 405 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 C11orf84Q9BUA3 381 aaPredicted RBP17.79■□□□□ 0.44
MCF2L-228ENST00000487354 KRT23Q9C075 422 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 OSBPL3Q9H4L5 887 aa17.79■□□□□ 0.44
MCF2L-228ENST00000487354 ZBTB47Q9UFB7 747 aaPredicted RBP17.79■□□□□ 0.44
MCF2L-228ENST00000487354 FNDC1Q4ZHG4 1894 aaPredicted RBP17.78■□□□□ 0.44
MCF2L-228ENST00000487354 ZDBF2Q9HCK1 2354 aa17.78■□□□□ 0.44
MCF2L-228ENST00000487354 NOP56O00567 594 aaKnown RBP17.78■□□□□ 0.44
MCF2L-228ENST00000487354 NCK2O43639 380 aa17.78■□□□□ 0.44
MCF2L-228ENST00000487354 DNAJB1P25685 340 aa17.78■□□□□ 0.44
MCF2L-228ENST00000487354 ARHGAP4P98171 946 aa17.78■□□□□ 0.44
MCF2L-228ENST00000487354 IMMTQ16891 758 aaKnown RBP17.78■□□□□ 0.44
MCF2L-228ENST00000487354 SMC5Q8IY18 1101 aa17.78■□□□□ 0.44
MCF2L-228ENST00000487354 CFAP54Q96N23 3096 aa17.77■□□□□ 0.44
MCF2L-228ENST00000487354 ENPP3O14638 875 aa17.77■□□□□ 0.44
MCF2L-228ENST00000487354 ADAM15Q13444 863 aa17.77■□□□□ 0.44
MCF2L-228ENST00000487354 NEDD9Q14511 834 aa17.77■□□□□ 0.44
MCF2L-228ENST00000487354 CNNM2Q9H8M5 875 aa17.77■□□□□ 0.44
MCF2L-228ENST00000487354 ALG13Q9NP73 1137 aaKnown RBP17.77■□□□□ 0.44
MCF2L-228ENST00000487354 RTEL1Q9NZ71 1219 aa17.77■□□□□ 0.44
MCF2L-228ENST00000487354 FIBPO43427 364 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 STAM2O75886 525 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 DGKIO75912 1065 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 CSPG5O95196 566 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 EYA4O95677 639 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 GNAT1P11488 350 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 GNPTABQ3T906 1256 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 FBXO47Q5MNV8 452 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 MARCH8Q5T0T0 291 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 UTP14CQ5TAP6 766 aaKnown RBP17.76■□□□□ 0.43
MCF2L-228ENST00000487354 ADGRD2Q7Z7M1 963 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 UPF3BQ9BZI7 483 aaKnown RBP17.76■□□□□ 0.43
MCF2L-228ENST00000487354 CLEC1BQ9P126 229 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 CD207Q9UJ71 328 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 ZNF215Q9UL58 517 aaPredicted RBP17.76■□□□□ 0.43
MCF2L-228ENST00000487354 RWDD3Q9Y3V2 267 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 MRPL42Q9Y6G3 142 aaKnown RBP17.76■□□□□ 0.43
MCF2L-228ENST00000487354 MYO15AQ9UKN7 3530 aa17.76■□□□□ 0.43
MCF2L-228ENST00000487354 NRCAMQ92823 1304 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 PNMA6FA0A0J9YX94 578 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 MBLAC1A4D2B0 266 aaPredicted RBP17.75■□□□□ 0.43
MCF2L-228ENST00000487354 GLP2RO95838 553 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 TROAPQ12815 778 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 IER5LQ5T953 404 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 EDAQ92838 391 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 POP1Q99575 1024 aaKnown RBP17.75■□□□□ 0.43
MCF2L-228ENST00000487354 SENP7Q9BQF6 1050 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 AGO3Q9H9G7 860 aaKnown RBP17.75■□□□□ 0.43
MCF2L-228ENST00000487354 DIAPH3Q9NSV4 1193 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 PLAGL2Q9UPG8 496 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 TAF6LQ9Y6J9 622 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 PLXNA3P51805 1871 aa17.75■□□□□ 0.43
MCF2L-228ENST00000487354 STXBP3O00186 592 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 ATP9AO75110 1047 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 ITGB1P05556 798 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 SP4Q02446 784 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 BMP8AQ7Z5Y6 402 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 RTN4RL1Q86UN2 441 aaPredicted RBP17.74■□□□□ 0.43
MCF2L-228ENST00000487354 SMRP1Q8NCR6 262 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 ZBTB10Q96DT7 871 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 MFSD14AQ96MC6 490 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 PLVAPQ9BX97 442 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 IGFLR1Q9H665 355 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 CACNA1HO95180 2353 aa17.74■□□□□ 0.43
MCF2L-228ENST00000487354 GSTTP1A0A1W2PQM5 241 aa17.73■□□□□ 0.43
MCF2L-228ENST00000487354 LOC730098B7Z3J9 87 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms