RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 TM4SF1P30408 202 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 NOVP48745 357 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 RPS6KA1Q15418 735 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 CEP85LQ5SZL2 805 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 PPP4R3AQ6IN85 833 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 SMIM5Q71RC9 77 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 MAATS1Q7Z4T9 603 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 FAM133AQ8N9E0 248 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 MYCBPAPQ8TBZ2 947 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 RTFDC1Q9BY42 306 aaPredicted RBP13.4□□□□□ -0.26
COL3A1-206ENST00000487010 FGFBP2Q9BYJ0 223 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 GANQ9H2C0 597 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 GGA2Q9UJY4 613 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 KCNK3O14649 394 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 ECHS1P30084 290 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 SEC24CP53992 1094 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 ERVK-9P63128 1117 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 C10orf76Q5T2E6 689 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 NBPF5PQ86XG9 351 aaPredicted RBP13.4□□□□□ -0.27
COL3A1-206ENST00000487010 CCDC24Q8N4L8 307 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 SCFD2Q8WU76 684 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 PBKQ96KB5 322 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 BMP2KQ9NSY1 1161 aaPredicted RBP13.4□□□□□ -0.27
COL3A1-206ENST00000487010 TBC1D7Q9P0N9 293 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 PCDHA2Q9Y5H9 948 aa13.4□□□□□ -0.27
COL3A1-206ENST00000487010 GOLGA6L10A6NI86 522 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 KIF4AO95239 1232 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 FAM107AO95990 144 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 PDHBP11177 359 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 HSD17B3P37058 310 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 MNAT1P51948 309 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 CUL1Q13616 776 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 ENOX2Q16206 610 aaKnown RBP13.39□□□□□ -0.27
COL3A1-206ENST00000487010 NELFCDQ8IXH7 590 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 HAS1Q92839 578 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 SETDB2Q96T68 719 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 KANSL2Q9H9L4 492 aa13.39□□□□□ -0.27
COL3A1-206ENST00000487010 GEMIN8Q9NWZ8 242 aaKnown RBP13.39□□□□□ -0.27
COL3A1-206ENST00000487010 FRMPD2Q68DX3 1309 aaPredicted RBP13.39□□□□□ -0.27
COL3A1-206ENST00000487010 BHMG1C9JSJ3 638 aaPredicted RBP13.38□□□□□ -0.27
COL3A1-206ENST00000487010 H0YGN5 161 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 H0YHG0 523 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 MYO1FO00160 1098 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 BTDP43251 543 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 USP11P51784 963 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 KCNQ4P56696 695 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 HDLBPQ00341 1268 aaKnown RBP13.38□□□□□ -0.27
COL3A1-206ENST00000487010 HLTFQ14527 1009 aaKnown RBP eCLIP13.38□□□□□ -0.27
COL3A1-206ENST00000487010 HYIQ5T013 277 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 CCDC65Q8IXS2 484 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 ZC3H3Q8IXZ2 948 aaKnown RBP13.38□□□□□ -0.27
COL3A1-206ENST00000487010 ARFGAP2Q8N6H7 521 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 ACTRT1Q8TDG2 376 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 CABS1Q96KC9 395 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 NCAPGQ9BPX3 1015 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 KCTD10Q9H3F6 313 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 DDX25Q9UHL0 483 aaKnown RBP13.38□□□□□ -0.27
COL3A1-206ENST00000487010 NFS1Q9Y697 457 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 GCOM1H8Y6P7 765 aaPredicted RBP13.38□□□□□ -0.27
COL3A1-206ENST00000487010 SSBP05455 408 aaKnown RBP eCLIP13.38□□□□□ -0.27
COL3A1-206ENST00000487010 MYZAPP0CAP1 466 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 TNNI2P48788 182 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 PTK2Q05397 1052 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 KCNH2Q12809 1159 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 ADAM9Q13443 819 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 IRF2BP2Q7Z5L9 587 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 CCDC91Q7Z6B0 441 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 TEX11Q8IYF3 940 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 SCFD1Q8WVM8 642 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 LRRC45Q96CN5 670 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 ANKIB1Q9P2G1 1089 aa13.38□□□□□ -0.27
COL3A1-206ENST00000487010 E7EVH7 732 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 CEP104O60308 925 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 HPDP32754 393 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-206ENST00000487010 EPS15P42566 896 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 UAP1Q16222 522 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-206ENST00000487010 IFI16Q16666 785 aaKnown RBP13.37□□□□□ -0.27
COL3A1-206ENST00000487010 COL24A1Q17RW2 1714 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 ASPRV1Q53RT3 343 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 DPY19L2P1Q6NXN4 242 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 ZNF571Q7Z3V5 609 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-206ENST00000487010 LRRC57Q8N9N7 239 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 GJA10Q969M2 543 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 CALR3Q96L12 384 aaKnown RBP13.37□□□□□ -0.27
COL3A1-206ENST00000487010 NT5C3AQ9H0P0 336 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 EMILIN3Q9NT22 766 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 PCDHA12Q9UN75 941 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 LEMD3Q9Y2U8 911 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 KDM3AQ9Y4C1 1321 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 KIF13BQ9NQT8 1826 aa13.37□□□□□ -0.27
COL3A1-206ENST00000487010 GPR75-ASB3A0A0A6YYF3 556 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 E9PMD0 336 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 MARCH6O60337 910 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 PLA2G4BP0C869 781 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 ZBTB48P10074 688 aaPredicted RBP13.36□□□□□ -0.27
COL3A1-206ENST00000487010 CLK2P49760 499 aaKnown RBP13.36□□□□□ -0.27
COL3A1-206ENST00000487010 ACTN3Q08043 901 aaPredicted RBP13.36□□□□□ -0.27
COL3A1-206ENST00000487010 DDR1Q08345 913 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 UBE2SQ16763 222 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 HERC4Q5GLZ8 1057 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms