RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TXNDC5Q8NBS9 432 aaKnown RBP5.1□□□□□ -1.59
VPS50-216ENST00000484954 UHMK1Q8TAS1 419 aaKnown RBP5.1□□□□□ -1.59
VPS50-216ENST00000484954 PHOSPHO1Q8TCT1 267 aa5.1□□□□□ -1.59
VPS50-216ENST00000484954 HIRIP3Q9BW71 556 aaPredicted RBP5.1□□□□□ -1.59
VPS50-216ENST00000484954 PCDH18Q9HCL0 1135 aa5.1□□□□□ -1.59
VPS50-216ENST00000484954 CROTQ9UKG9 612 aa5.1□□□□□ -1.59
VPS50-216ENST00000484954 PCDHA8Q9Y5H6 950 aa5.1□□□□□ -1.59
VPS50-216ENST00000484954 ACOT7O00154 380 aa5.09□□□□□ -1.59
VPS50-216ENST00000484954 TTLL11Q8NHH1 800 aa5.09□□□□□ -1.59
VPS50-216ENST00000484954 PCDH19Q8TAB3 1148 aa5.09□□□□□ -1.59
VPS50-216ENST00000484954 PMFBP1Q8TBY8 1022 aa5.09□□□□□ -1.59
VPS50-216ENST00000484954 DNAJC7Q99615 494 aa5.09□□□□□ -1.59
VPS50-216ENST00000484954 WDR26Q9H7D7 661 aa5.09□□□□□ -1.59
VPS50-216ENST00000484954 NGRNQ9NPE2 291 aaKnown RBP5.09□□□□□ -1.59
VPS50-216ENST00000484954 DSEQ9UL01 958 aa5.09□□□□□ -1.59
VPS50-216ENST00000484954 FAM47E-STBD1D6RA91 191 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 C1QTNF3-AMACRE9PGA6 284 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 MAFKO60675 156 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 COL6A1P12109 1028 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 IL13P35225 146 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 SUMO1P63165 101 aaKnown RBP5.08□□□□□ -1.6
VPS50-216ENST00000484954 SPIRE1Q08AE8 756 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 PAN2Q504Q3 1202 aaKnown RBP5.08□□□□□ -1.6
VPS50-216ENST00000484954 PRAMEF18Q5VWM3 479 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 PTPRN2Q92932 1015 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 KISS1RQ969F8 398 aaPredicted RBP5.08□□□□□ -1.6
VPS50-216ENST00000484954 ARMC5Q96C12 935 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 MBD6Q96DN6 1003 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 RBM15Q96T37 977 aaKnown RBP eCLIP5.08□□□□□ -1.6
VPS50-216ENST00000484954 ALG1Q9BT22 464 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 SLITRK6Q9H5Y7 841 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 HSPBP1Q9NZL4 362 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 CBLCQ9ULV8 474 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 MRPS23Q9Y3D9 190 aaKnown RBP5.08□□□□□ -1.6
VPS50-216ENST00000484954 PCDHA9Q9Y5H5 950 aa5.08□□□□□ -1.6
VPS50-216ENST00000484954 KCNK3O14649 394 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 AMY2AP04746 511 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 CKMP06732 381 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 SRGAP2CP0DJJ0 459 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 PYGMP11217 842 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 FAHP16930 419 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 AMY2BP19961 511 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 TACR2P21452 398 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 EPHA5P54756 1037 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 GUCY1A3Q02108 690 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 PAK1Q13153 545 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 FAM26FQ5R3K3 315 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 CD276Q5ZPR3 534 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 KCTD1Q719H9 257 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 SPRED1Q7Z699 444 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.07□□□□□ -1.6
VPS50-216ENST00000484954 MTDHQ86UE4 582 aaKnown RBP5.07□□□□□ -1.6
VPS50-216ENST00000484954 TRIM48Q8IWZ4 208 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 Q8N1X5 172 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 DTX3Q8N9I9 347 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 YTHDC1Q96MU7 727 aaKnown RBP5.07□□□□□ -1.6
VPS50-216ENST00000484954 CLIC6Q96NY7 704 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 SRPK1Q96SB4 655 aaKnown RBP5.07□□□□□ -1.6
VPS50-216ENST00000484954 TMEM209Q96SK2 561 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 DNAJC2Q99543 621 aaKnown RBP5.07□□□□□ -1.6
VPS50-216ENST00000484954 DHRS4Q9BTZ2 278 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 SLC52A2Q9HAB3 445 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 INVSQ9Y283 1065 aa5.07□□□□□ -1.6
VPS50-216ENST00000484954 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.06□□□□□ -1.6
VPS50-216ENST00000484954 MROH6A6NGR9 719 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 FAM90A27PA6NNH2 459 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 ARVCFO00192 962 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 MAN2B1O00754 1011 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 B4GALT3O60512 393 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 CRTAMO95727 393 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 GLRBP48167 497 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 SKIDA1Q1XH10 827 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 ARHGAP36Q6ZRI8 547 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 MAMDC2Q7Z304 686 aaPredicted RBP5.06□□□□□ -1.6
VPS50-216ENST00000484954 OSTM1Q86WC4 334 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 PTRH1Q86Y79 214 aaKnown RBP5.06□□□□□ -1.6
VPS50-216ENST00000484954 LILRB2Q8N423 598 aa5.06□□□□□ -1.6
VPS50-216ENST00000484954 SH3RF3Q8TEJ3 882 aaPredicted RBP5.06□□□□□ -1.6
VPS50-216ENST00000484954 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.05□□□□□ -1.6
VPS50-216ENST00000484954 AQP7O14520 342 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 WNT9AO14904 365 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 RASGRP1O95267 797 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 PDE6AP16499 860 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 KRT15P19012 456 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 JAM2P57087 298 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 PFKPQ01813 784 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 TBC1D10BQ4KMP7 808 aaPredicted RBP5.05□□□□□ -1.6
VPS50-216ENST00000484954 VASNQ6EMK4 673 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 FSTL4Q6MZW2 842 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 TRMT10BQ6PF06 316 aaKnown RBP5.05□□□□□ -1.6
VPS50-216ENST00000484954 LRP10Q7Z4F1 713 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 CHST13Q8NET6 341 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 NUDT10Q8NFP7 164 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 SLC7A14Q8TBB6 771 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 NUDT11Q96G61 164 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 SCLYQ96I15 445 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 LCORQ96JN0 433 aaPredicted RBP5.05□□□□□ -1.6
VPS50-216ENST00000484954 PDGFDQ9GZP0 370 aaPredicted RBP5.05□□□□□ -1.6
VPS50-216ENST00000484954 L2HGDHQ9H9P8 463 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 DLL4Q9NR61 685 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms