RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 ZC3H4Q9UPT8 1303 aaKnown RBP16.9■□□□□ 0.3
C9orf3-218ENST00000482056 FRMD3A2A2Y4 597 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L15C9J2P7 530 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L13C9JLJ4 530 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L11C9JVI0 530 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L18D6R9N7 530 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L22D6RA61 530 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L17D6RBQ6 530 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L19D6RCP7 530 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L20D6RJB6 530 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 HMGB2P26583 209 aaKnown RBP16.9■□□□□ 0.3
C9orf3-218ENST00000482056 CXCR5P32302 372 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 KLHL30Q0D2K2 578 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L24Q0WX57 530 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 USP17L6PQ6QN14 398 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 MKL1Q969V6 931 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 GJD4Q96KN9 370 aaPredicted RBP16.9■□□□□ 0.3
C9orf3-218ENST00000482056 RUFY1Q96T51 708 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 ZHX3Q9H4I2 956 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 KANSL2Q9H9L4 492 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 AIPL1Q9NZN9 384 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 DNM3Q9UQ16 869 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 SPATA31A6Q5VVP1 1343 aa16.9■□□□□ 0.3
C9orf3-218ENST00000482056 GRID2IPA4D2P6 1211 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 GOLGA8KD6RF30 607 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 NCK2O43639 380 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 SLC12A3P55017 1021 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 NNTQ13423 1086 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 SLFN13Q68D06 897 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 IFT20Q8IY31 132 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 TBC1D5Q92609 795 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 PSMB7Q99436 277 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.89■□□□□ 0.3
C9orf3-218ENST00000482056 SALL4Q9UJQ4 1053 aa16.89■□□□□ 0.3
C9orf3-218ENST00000482056 BZW2Q9Y6E2 419 aaKnown RBP16.89■□□□□ 0.3
C9orf3-218ENST00000482056 NPHP3-ACAD11A0A0J9YXS1 232 aa16.89■□□□□ 0.29
C9orf3-218ENST00000482056 GOLGA6CA6NDK9 693 aa16.89■□□□□ 0.29
C9orf3-218ENST00000482056 CALUO43852 315 aaPredicted RBP16.89■□□□□ 0.29
C9orf3-218ENST00000482056 TLR2O60603 784 aa16.89■□□□□ 0.29
C9orf3-218ENST00000482056 FOSP01100 380 aaPredicted RBP16.89■□□□□ 0.29
C9orf3-218ENST00000482056 GOLGA6DP0CG33 693 aa16.89■□□□□ 0.29
C9orf3-218ENST00000482056 IFI16Q16666 785 aaKnown RBP16.89■□□□□ 0.29
C9orf3-218ENST00000482056 ALS2CLQ60I27 953 aa16.89■□□□□ 0.29
C9orf3-218ENST00000482056 FRMD5Q7Z6J6 570 aa16.89■□□□□ 0.29
C9orf3-218ENST00000482056 GPIHBP1Q8IV16 184 aa16.89■□□□□ 0.29
C9orf3-218ENST00000482056 GOLGA6AQ9NYA3 693 aa16.89■□□□□ 0.29
C9orf3-218ENST00000482056 DMGDHQ9UI17 866 aaKnown RBP16.89■□□□□ 0.29
C9orf3-218ENST00000482056 KIF13BQ9NQT8 1826 aa16.89■□□□□ 0.29
C9orf3-218ENST00000482056 HSF2BPO75031 334 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 MED24O75448 989 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 PALMO75781 387 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 EEF2P13639 858 aaKnown RBP16.88■□□□□ 0.29
C9orf3-218ENST00000482056 NR2F2P24468 414 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 ARHGAP4P98171 946 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 CACNB1Q02641 598 aaPredicted RBP16.88■□□□□ 0.29
C9orf3-218ENST00000482056 KCNH2Q12809 1159 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 PPFIA1Q13136 1202 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 DOK7Q18PE1 504 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 CERKLQ49MI3 558 aaPredicted RBP16.88■□□□□ 0.29
C9orf3-218ENST00000482056 Q4G0T1 1027 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 APOBEC3HQ6NTF7 200 aaKnown RBP16.88■□□□□ 0.29
C9orf3-218ENST00000482056 CAVIN3Q969G5 261 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 AMNQ9BXJ7 453 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 FGFBP2Q9BYJ0 223 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 HDAC9Q9UKV0 1011 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 SPDYE3A6NKU9 549 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 CRKP46108 304 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 IRX5P78411 483 aaPredicted RBP16.88■□□□□ 0.29
C9orf3-218ENST00000482056 SF3B2Q13435 895 aaKnown RBP16.88■□□□□ 0.29
C9orf3-218ENST00000482056 EZH2Q15910 746 aaKnown RBP16.88■□□□□ 0.29
C9orf3-218ENST00000482056 KIAA0753Q2KHM9 967 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 HDAC7Q8WUI4 952 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 FAM20AQ96MK3 541 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 MXD3Q9BW11 206 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 GANQ9H2C0 597 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 PLCB1Q9NQ66 1216 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 ARMCX3Q9UH62 379 aaPredicted RBP16.88■□□□□ 0.29
C9orf3-218ENST00000482056 TRAF3IP3Q9Y228 551 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 PCDHGC5Q9Y5F6 944 aa16.88■□□□□ 0.29
C9orf3-218ENST00000482056 POTEFA5A3E0 1075 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 BTNL10A8MVZ5 291 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 AGPSO00116 658 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 CLSTN1O94985 981 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 AFPP02771 609 aaKnown RBP16.87■□□□□ 0.29
C9orf3-218ENST00000482056 POTEIP0CG38 1075 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 NPR1P16066 1061 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 RPA1P27694 616 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 ALDH1B1P30837 517 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 STAT3P40763 770 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 SLC7A5Q01650 507 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 KNOP1Q1ED39 458 aaKnown RBP16.87■□□□□ 0.29
C9orf3-218ENST00000482056 PRR16Q569H4 304 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 POTEGQ6S5H5 508 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 POTEEQ6S8J3 1075 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 LRRC31Q6UY01 552 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 GBP6Q6ZN66 633 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 FAM133AQ8N9E0 248 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 SYT2Q8N9I0 419 aaPredicted RBP16.87■□□□□ 0.29
C9orf3-218ENST00000482056 ETNPPLQ8TBG4 499 aa16.87■□□□□ 0.29
C9orf3-218ENST00000482056 TAF4BQ92750 862 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms