RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 CRACR2BQ8N4Y2 399 aaPredicted RBP23.16■■□□□ 1.3
SDF4-206ENST00000478938 DPH5Q9H2P9 285 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 PHF24Q9UPV7 400 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 hCG_1642624A0A1W2PR95 340 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 PEX11AO75192 247 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 ZFYP08048 801 aaPredicted RBP23.16■■□□□ 1.3
SDF4-206ENST00000478938 FITM2Q8N6M3 262 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 ZNF594Q96JF6 807 aaPredicted RBP23.16■■□□□ 1.3
SDF4-206ENST00000478938 ZKSCAN3Q9BRR0 538 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 PREBQ9HCU5 417 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 FGFR1OP2Q9NVK5 253 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 ADORA1P30542 326 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 APBB1IPQ7Z5R6 666 aaPredicted RBP23.15■■□□□ 1.3
SDF4-206ENST00000478938 AZI2Q9H6S1 392 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 ABCF2Q9UG63 623 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 ROBO2Q9HCK4 1378 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 HEG1Q9ULI3 1381 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 TOPAZ1Q8N9V7 1692 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 PRDM1O75626 825 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 TPBGLP0DKB5 382 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 KLRC1P26715 233 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 IL17AQ16552 155 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 KIAA0753Q2KHM9 967 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 NDNQ99608 321 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 MMRN2Q9H8L6 949 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 ZSWIM5Q9P217 1185 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 AMACRQ9UHK6 382 aa23.15■■□□□ 1.3
SDF4-206ENST00000478938 FER1L4A9Z1Z3 1794 aa23.14■■□□□ 1.3
SDF4-206ENST00000478938 H0Y3Z8 333 aa23.14■■□□□ 1.3
SDF4-206ENST00000478938 PDLIM1O00151 329 aa23.14■■□□□ 1.3
SDF4-206ENST00000478938 GM2AP17900 193 aa23.14■■□□□ 1.3
SDF4-206ENST00000478938 ZAP70P43403 619 aa23.14■■□□□ 1.3
SDF4-206ENST00000478938 TMEM62Q0P6H9 643 aa23.14■■□□□ 1.3
SDF4-206ENST00000478938 PABPC1LQ4VXU2 614 aaKnown RBP23.14■■□□□ 1.3
SDF4-206ENST00000478938 TDRD12Q587J7 1177 aaKnown RBP23.14■■□□□ 1.3
SDF4-206ENST00000478938 DNAJC9Q8WXX5 260 aa23.14■■□□□ 1.3
SDF4-206ENST00000478938 VCXQ9H320 206 aa23.14■■□□□ 1.3
SDF4-206ENST00000478938 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.14■■□□□ 1.3
SDF4-206ENST00000478938 ASTE1Q2TB18 679 aaPredicted RBP23.14■■□□□ 1.29
SDF4-206ENST00000478938 HOOK3Q86VS8 718 aa23.14■■□□□ 1.29
SDF4-206ENST00000478938 DISP2A7MBM2 1401 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 CEP104O60308 925 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 ACADSP16219 412 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 PDE6CP51160 858 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 TTC38Q5R3I4 469 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 PLPPR3Q6T4P5 718 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 GBP7Q8N8V2 638 aaPredicted RBP23.13■■□□□ 1.29
SDF4-206ENST00000478938 STK32AQ8WU08 396 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 PPP1R12CQ9BZL4 782 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 TRIM31Q9BZY9 425 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 GOLPH3Q9H4A6 298 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 ETNK1Q9HBU6 452 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 GALNT8Q9NY28 637 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 BHMG1C9JSJ3 638 aaPredicted RBP23.13■■□□□ 1.29
SDF4-206ENST00000478938 RNMTO43148 476 aaKnown RBP23.13■■□□□ 1.29
SDF4-206ENST00000478938 ANKRD40Q6AI12 368 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 SCFD2Q8WU76 684 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 TAF4BQ92750 862 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 OPTNQ96CV9 577 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 TRAPPC9Q96Q05 1148 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 DDX23Q9BUQ8 820 aaKnown RBP23.13■■□□□ 1.29
SDF4-206ENST00000478938 SLC4A4Q9Y6R1 1079 aa23.13■■□□□ 1.29
SDF4-206ENST00000478938 LIFRP42702 1097 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 PTDSS1P48651 473 aaKnown RBP23.12■■□□□ 1.29
SDF4-206ENST00000478938 LRRC14Q15048 493 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 DBN1Q16643 649 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 CMPK2Q5EBM0 449 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 TRIM42Q8IWZ5 723 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 CELF4Q9BZC1 486 aaKnown RBP23.12■■□□□ 1.29
SDF4-206ENST00000478938 GPR108Q9NPR9 543 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 SIK3Q9Y2K2 1263 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 TTI1O43156 1089 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 SUN1O94901 812 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 ITGA4P13612 1032 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 KRT2P35908 639 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 ATP2C1P98194 919 aaPredicted RBP23.12■■□□□ 1.29
SDF4-206ENST00000478938 TSNAXIP1Q2TAA8 658 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 ZSCAN29Q8IWY8 852 aaPredicted RBP23.12■■□□□ 1.29
SDF4-206ENST00000478938 SUPT20HQ8NEM7 779 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 RMDN2Q96LZ7 410 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 CYP39A1Q9NYL5 469 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 ANAPC4Q9UJX5 808 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 TECPR2O15040 1411 aa23.12■■□□□ 1.29
SDF4-206ENST00000478938 EIF3BP55884 814 aaKnown RBP23.11■■□□□ 1.29
SDF4-206ENST00000478938 NAB2Q15742 525 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 AKAP4Q5JQC9 854 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 ASAP3Q8TDY4 903 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 FAM136AQ96C01 138 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 CCDC113Q9H0I3 377 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 CCDC134Q9H6E4 229 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 ENOX2Q16206 610 aaKnown RBP23.11■■□□□ 1.29
SDF4-206ENST00000478938 MGARPQ8TDB4 240 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 NUDCD1Q96RS6 583 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 EPB41L4BQ9H329 900 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 TACC3Q9Y6A5 838 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 ADAMTSL3P82987 1691 aa23.11■■□□□ 1.29
SDF4-206ENST00000478938 TCP11X1B4DZS4 312 aa23.1■■□□□ 1.29
SDF4-206ENST00000478938 DIXDC1Q155Q3 683 aa23.1■■□□□ 1.29
SDF4-206ENST00000478938 MUM1Q2TAK8 710 aa23.1■■□□□ 1.29
SDF4-206ENST00000478938 PIGOQ8TEQ8 1089 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms