RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 TXLNBQ8N3L3 684 aa13.52□□□□□ -0.25
PTPRF-212ENST00000477970 BAP1Q92560 729 aa13.52□□□□□ -0.25
PTPRF-212ENST00000477970 TUFT1Q9NNX1 390 aa13.52□□□□□ -0.25
PTPRF-212ENST00000477970 ZNF277Q9NRM2 450 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-212ENST00000477970 ZBTB21Q9ULJ3 1066 aa13.52□□□□□ -0.25
PTPRF-212ENST00000477970 MSH4O15457 936 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 IPO7O95373 1038 aaKnown RBP13.51□□□□□ -0.25
PTPRF-212ENST00000477970 PRR16Q569H4 304 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 CHURC1Q8WUH1 139 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 SCFD1Q8WVM8 642 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 JAKMIP2Q96AA8 810 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 RPGRIP1Q96KN7 1286 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 EHMT1Q9H9B1 1298 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 GPBP1L1Q9HC44 474 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-212ENST00000477970 PGAP2Q9UHJ9 254 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 MYO6Q9UM54 1294 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 DNM3Q9UQ16 869 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 RABGAP1Q9Y3P9 1069 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 ABL1P00519 1130 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 GIT2Q14161 759 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 NFIL3Q16649 462 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 CEP72Q9P209 647 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 SPDYE4A6NLX3 237 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 RBAK-RBAKDNI3L0D1 243 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 KIF3CO14782 793 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 ZSCAN20P17040 1043 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-212ENST00000477970 GHRHRQ02643 423 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 PPP2R5CQ13362 524 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 DLGAP5Q15398 846 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 CC2D1AQ6P1N0 951 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-212ENST00000477970 PDXDC1Q6P996 788 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 EMILIN3Q9NT22 766 aa13.51□□□□□ -0.25
PTPRF-212ENST00000477970 NKRFO15226 690 aaKnown RBP eCLIP13.5□□□□□ -0.25
PTPRF-212ENST00000477970 PJA2O43164 708 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 EYA4O95677 639 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 PNMA6AP0CW24 399 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-212ENST00000477970 CCDC122Q5T0U0 273 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 DPY19L2Q6NUT2 758 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 GLIS3Q8NEA6 775 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 GJA10Q969M2 543 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 PCMTD1Q96MG8 357 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-212ENST00000477970 VCPKMTQ9H867 229 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 GINM1Q9NU53 330 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 ASTE1Q2TB18 679 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-212ENST00000477970 TEX35Q5T0J7 233 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 SLC5A5Q92911 643 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 PARD6BQ9BYG5 372 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 UBXN6Q9BZV1 441 aa13.5□□□□□ -0.25
PTPRF-212ENST00000477970 ATP8B3O60423 1300 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 GAP43P17677 238 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 STAT3P40763 770 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 KCNMA1Q12791 1236 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 LRRC41Q15345 812 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 FRMD5Q7Z6J6 570 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 KIAA1328Q86T90 577 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 NEK11Q8NG66 645 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 CCDC42Q96M95 316 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 ARHGAP20Q9P2F6 1191 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 FEM1BQ9UK73 627 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 MRPL11Q9Y3B7 192 aaKnown RBP13.49□□□□□ -0.25
PTPRF-212ENST00000477970 UBE4BO95155 1302 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 CTAGE15A4D2H0 777 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 POTEFA5A3E0 1075 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 TRAF5O00463 557 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 PDXKO00764 312 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 POTEIP0CG38 1075 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 CTAGE8P0CG41 777 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 PRLRP16471 622 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 IKQ13123 557 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-212ENST00000477970 USH1GQ495M9 461 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 HERC4Q5GLZ8 1057 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-212ENST00000477970 POTEGQ6S5H5 508 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 POTEEQ6S8J3 1075 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 CTAGE6Q86UF2 777 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 CTAGE4Q8IX94 777 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 GPC2Q8N158 579 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 ANKZF1Q9H8Y5 726 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 OLFML3Q9NRN5 406 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 KCND2Q9NZV8 630 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 GUCA1BQ9UMX6 200 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 SLC16A3O15427 465 aaKnown RBP13.49□□□□□ -0.25
PTPRF-212ENST00000477970 RAD21O60216 631 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 PSMD10O75832 226 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 SETQ01105 290 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-212ENST00000477970 SPA17Q15506 151 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 NCAPH2Q6IBW4 605 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 OGFOD1Q8N543 542 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 SAMD3Q8N6K7 520 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 JDP2Q8WYK2 163 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 HSD17B14Q9BPX1 270 aa13.49□□□□□ -0.25
PTPRF-212ENST00000477970 GCOM1H8Y6P7 765 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-212ENST00000477970 EIF3DO15371 548 aaKnown RBP eCLIP13.48□□□□□ -0.25
PTPRF-212ENST00000477970 USO1O60763 962 aaKnown RBP13.48□□□□□ -0.25
PTPRF-212ENST00000477970 POLR2MP0CAP2 368 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 KIAA1755Q5JYT7 1200 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 ZNF572Q7Z3I7 529 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-212ENST00000477970 NIM1KQ8IY84 436 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 FGFBP2Q9BYJ0 223 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 ZNRF3Q9ULT6 936 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 ZNF541Q9H0D2 1346 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms