RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 SDF4Q9BRK5 362 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 ZNF577Q9BSK1 485 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 HDAC6Q9UBN7 1215 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 COLQQ9Y215 455 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-208ENST00000476739 CEP290O15078 2479 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 UMODL1Q5DID0 1318 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 MROH7Q68CQ1 1323 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 TRIP12Q14669 1992 aaPredicted RBP11□□□□□ -0.65
HDAC3-208ENST00000476739 KIF28PB7ZC32 967 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 H3BRB1 525 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 GJB2P29033 226 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 ACTR2P61160 394 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 SETQ01105 290 aaPredicted RBP11□□□□□ -0.65
HDAC3-208ENST00000476739 TRIM29Q14134 588 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 LETM2Q2VYF4 491 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 Q4G0T1 1027 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 NEK8Q86SG6 692 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 FAM184AQ8NB25 1140 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 FBXO18Q8NFZ0 1043 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 BADQ92934 168 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 GDF15Q99988 308 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 PPP1R12CQ9BZL4 782 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 PRO3102Q9H379 93 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 RNPEPQ9H4A4 650 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 TUT1Q9H6E5 874 aaKnown RBP11□□□□□ -0.65
HDAC3-208ENST00000476739 GTF2IRD1Q9UHL9 959 aa11□□□□□ -0.65
HDAC3-208ENST00000476739 TLR3O15455 904 aaKnown RBP10.99□□□□□ -0.65
HDAC3-208ENST00000476739 LGR5O75473 907 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 ATG7O95352 703 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 SMIM10L2AP0DMW4 78 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 SMIM10L2BP0DMW5 78 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 RAG1P15918 1043 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 MARK3P27448 753 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 CYP2C18P33260 490 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 PTPN11Q06124 597 aaPredicted RBP10.99□□□□□ -0.65
HDAC3-208ENST00000476739 CUL4AQ13619 759 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 MOXD1Q6UVY6 613 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 ABHD15Q6UXT9 468 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 SESTD1Q86VW0 696 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 ETNPPLQ8TBG4 499 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 SLC5A5Q92911 643 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 WNT8BQ93098 351 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 KATNAL1Q9BW62 490 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 SEZ6LQ9BYH1 1024 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 BRMS1Q9HCU9 246 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 PRKAG2Q9UGJ0 569 aa10.99□□□□□ -0.65
HDAC3-208ENST00000476739 DDX25Q9UHL0 483 aaKnown RBP10.99□□□□□ -0.65
HDAC3-208ENST00000476739 IGKV6D-21A0A0A0MT36 114 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 CCNT1O60563 726 aaKnown RBP10.98□□□□□ -0.65
HDAC3-208ENST00000476739 TIMP1P01033 207 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 EPHB4P54760 987 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 PTGISQ16647 500 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 PPP4R3AQ6IN85 833 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 POTEDQ86YR6 584 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 CCDC60Q8IWA6 550 aaPredicted RBP10.98□□□□□ -0.65
HDAC3-208ENST00000476739 C7orf31Q8N865 590 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 DHX38Q92620 1227 aaKnown RBP10.98□□□□□ -0.65
HDAC3-208ENST00000476739 HAS1Q92839 578 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 GLG1Q92896 1179 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 NOC4LQ9BVI4 516 aaKnown RBP10.98□□□□□ -0.65
HDAC3-208ENST00000476739 WNT8AQ9H1J5 351 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 TBC1D22BQ9NU19 505 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 SETD4Q9NVD3 440 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 EMSYQ7Z589 1322 aa10.98□□□□□ -0.65
HDAC3-208ENST00000476739 TREHO43280 583 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 CHMP2AO43633 222 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 PSMD10O75832 226 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 SUPT20HL2P0C7V6 817 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 ATP2B1P20020 1258 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 ATP4AP20648 1035 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 HOXC8P31273 242 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 STAT5BP51692 787 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 CCL23P55773 120 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 LRCH2Q5VUJ6 765 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 ZNF746Q6NUN9 644 aaPredicted RBP10.97□□□□□ -0.65
HDAC3-208ENST00000476739 SWSAP1Q6NVH7 229 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 B3GNT9Q6UX72 402 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 VWCEQ96DN2 955 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 ZBTB10Q96DT7 871 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 SCLYQ96I15 445 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 UNC45AQ9H3U1 944 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 HIPK3Q9H422 1215 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 SMARCAD1Q9H4L7 1026 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 KCNMB3Q9NPA1 279 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 FOXD4L1Q9NU39 408 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 ZNF215Q9UL58 517 aaPredicted RBP10.97□□□□□ -0.65
HDAC3-208ENST00000476739 SMC3Q9UQE7 1217 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 WDR81Q562E7 1941 aa10.97□□□□□ -0.65
HDAC3-208ENST00000476739 SCN5AQ14524 2016 aa10.96□□□□□ -0.65
HDAC3-208ENST00000476739 C17orf102A2RUQ5 167 aa10.96□□□□□ -0.65
HDAC3-208ENST00000476739 K7ELQ4 463 aaPredicted RBP10.96□□□□□ -0.65
HDAC3-208ENST00000476739 EML1O00423 815 aa10.96□□□□□ -0.65
HDAC3-208ENST00000476739 GAS7O60861 476 aa10.96□□□□□ -0.65
HDAC3-208ENST00000476739 CSF2RAP15509 400 aa10.96□□□□□ -0.65
HDAC3-208ENST00000476739 BMP8BP34820 402 aa10.96□□□□□ -0.65
HDAC3-208ENST00000476739 ADAM17P78536 824 aa10.96□□□□□ -0.65
HDAC3-208ENST00000476739 NBR1Q14596 966 aa10.96□□□□□ -0.65
HDAC3-208ENST00000476739 PLCB4Q15147 1175 aa10.96□□□□□ -0.65
HDAC3-208ENST00000476739 SAFBQ15424 915 aaKnown RBP eCLIP10.96□□□□□ -0.65
HDAC3-208ENST00000476739 UGCGQ16739 394 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms