RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 IL23AQ9NPF7 189 aa17.21■□□□□ 0.35
LIMS1-212ENST00000474038 STXBP5LQ9Y2K9 1186 aa17.21■□□□□ 0.35
LIMS1-212ENST00000474038 CDH23Q9H251 3354 aa17.2■□□□□ 0.34
LIMS1-212ENST00000474038 SUPT20HL2P0C7V6 817 aa17.2■□□□□ 0.34
LIMS1-212ENST00000474038 USP11P51784 963 aa17.2■□□□□ 0.34
LIMS1-212ENST00000474038 SP4Q02446 784 aa17.2■□□□□ 0.34
LIMS1-212ENST00000474038 PSRC1Q6PGN9 363 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-212ENST00000474038 OXER1Q8TDS5 423 aa17.2■□□□□ 0.34
LIMS1-212ENST00000474038 TBCKQ8TEA7 893 aa17.2■□□□□ 0.34
LIMS1-212ENST00000474038 C16orf70Q9BSU1 422 aa17.2■□□□□ 0.34
LIMS1-212ENST00000474038 TTYH1Q9H313 450 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-212ENST00000474038 HAS3O00219 553 aa17.19■□□□□ 0.34
LIMS1-212ENST00000474038 LGALS2P05162 132 aa17.19■□□□□ 0.34
LIMS1-212ENST00000474038 PSEN2P49810 448 aa17.19■□□□□ 0.34
LIMS1-212ENST00000474038 FOSBP53539 338 aa17.19■□□□□ 0.34
LIMS1-212ENST00000474038 ITGB3BPQ13352 177 aaPredicted RBP17.19■□□□□ 0.34
LIMS1-212ENST00000474038 RASIP1Q5U651 963 aa17.19■□□□□ 0.34
LIMS1-212ENST00000474038 KRT25Q7Z3Z0 450 aa17.19■□□□□ 0.34
LIMS1-212ENST00000474038 TMX3Q96JJ7 454 aa17.19■□□□□ 0.34
LIMS1-212ENST00000474038 SEMA6BQ9H3T3 888 aa17.19■□□□□ 0.34
LIMS1-212ENST00000474038 NFASCO94856 1347 aa17.19■□□□□ 0.34
LIMS1-212ENST00000474038 SCN5AQ14524 2016 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-212ENST00000474038 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-212ENST00000474038 GSTTP1A0A1W2PQM5 241 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 GRXCR1A8MXD5 290 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 MCM2P49736 904 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 PTPN11Q06124 597 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-212ENST00000474038 MFSD10Q14728 455 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 NONOQ15233 471 aaKnown RBP eCLIP17.18■□□□□ 0.34
LIMS1-212ENST00000474038 KIAA0753Q2KHM9 967 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 PRR16Q569H4 304 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 KRT40Q6A162 431 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 LENG9Q96B70 501 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 VWCEQ96DN2 955 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 SDF4Q9BRK5 362 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 KATNAL1Q9BW62 490 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 JPH1Q9HDC5 661 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-212ENST00000474038 CXXC1Q9P0U4 656 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-212ENST00000474038 SLC9A2Q9UBY0 812 aa17.18■□□□□ 0.34
LIMS1-212ENST00000474038 CCDC194A0A1B0GVG4 234 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 H3BRB1 525 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 IPO5O00410 1097 aaKnown RBP17.17■□□□□ 0.34
LIMS1-212ENST00000474038 DHX15O43143 795 aaKnown RBP17.17■□□□□ 0.34
LIMS1-212ENST00000474038 FGBP02675 491 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 MMP1P03956 469 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 DNAJB2P25686 324 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 KRT2P35908 639 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 TCF7P36402 384 aaPredicted RBP17.17■□□□□ 0.34
LIMS1-212ENST00000474038 HMGN5P82970 282 aaKnown RBP17.17■□□□□ 0.34
LIMS1-212ENST00000474038 SETQ01105 290 aaPredicted RBP17.17■□□□□ 0.34
LIMS1-212ENST00000474038 NR5A1Q13285 461 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 TRIM29Q14134 588 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 INF2Q27J81 1249 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 UTP14CQ5TAP6 766 aaKnown RBP17.17■□□□□ 0.34
LIMS1-212ENST00000474038 GDF6Q6KF10 455 aaPredicted RBP17.17■□□□□ 0.34
LIMS1-212ENST00000474038 OTOP2Q7RTS6 562 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 SESTD1Q86VW0 696 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 SEPT1Q8WYJ6 367 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 HERVK_113Q902F9 699 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 TNFRSF25Q93038 417 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 UIMC1Q96RL1 719 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 TUT1Q9H6E5 874 aaKnown RBP17.17■□□□□ 0.34
LIMS1-212ENST00000474038 NOD1Q9Y239 953 aa17.17■□□□□ 0.34
LIMS1-212ENST00000474038 CYP3A7-CYP3A51PA0A087WV96 503 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 TDP2O95551 362 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 CYP3A7P24462 503 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 PBX2P40425 430 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 PTGISQ16647 500 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 EARS2Q5JPH6 523 aaKnown RBP17.16■□□□□ 0.34
LIMS1-212ENST00000474038 DEFB128Q7Z7B8 93 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 TRIM50Q86XT4 487 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 CTAGE1Q96RT6 745 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 CDX2Q99626 313 aaPredicted RBP17.16■□□□□ 0.34
LIMS1-212ENST00000474038 ZNF577Q9BSK1 485 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 BRMS1Q9HCU9 246 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 HDAC6Q9UBN7 1215 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 TANC1Q9C0D5 1861 aa17.16■□□□□ 0.34
LIMS1-212ENST00000474038 EVPLQ92817 2033 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 FAM205CA6NFA0 338 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 BTBD18B2RXH4 712 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 MSH4O15457 936 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 CCNE2O96020 404 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 ACTR2P61160 394 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 GUCY1B3Q02153 619 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 MOXD1Q6UVY6 613 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 PIK3AP1Q6ZUJ8 805 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 DIS3L2Q8IYB7 885 aaKnown RBP17.15■□□□□ 0.34
LIMS1-212ENST00000474038 RPUSD2Q8IZ73 545 aaKnown RBP17.15■□□□□ 0.34
LIMS1-212ENST00000474038 C7orf31Q8N865 590 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 C8orf76Q96K31 380 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 MBOAT7Q96N66 472 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 PBX4Q9BYU1 374 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 GTF2IRD1Q9UHL9 959 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 TET1Q8NFU7 2136 aa17.15■□□□□ 0.34
LIMS1-212ENST00000474038 DDX39AO00148 427 aaKnown RBP17.14■□□□□ 0.33
LIMS1-212ENST00000474038 IQCF3P0C7M6 154 aa17.14■□□□□ 0.33
LIMS1-212ENST00000474038 Q4G0T1 1027 aa17.14■□□□□ 0.33
LIMS1-212ENST00000474038 NEK8Q86SG6 692 aa17.14■□□□□ 0.33
LIMS1-212ENST00000474038 FAM184AQ8NB25 1140 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms