RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 HOXA13P31271 388 aaPredicted RBP10.87□□□□□ -0.67
VCL-204ENST00000472585 THPOP40225 353 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 TCF15Q12870 199 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 FBXO11Q86XK2 927 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 MCF2L2Q86YR7 1114 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 FBXL6Q8N531 539 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 ESR2Q92731 530 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 TOP1MTQ969P6 601 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 MTMR8Q96EF0 704 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 ZSCAN10Q96SZ4 725 aaPredicted RBP10.87□□□□□ -0.67
VCL-204ENST00000472585 KATNAL1Q9BW62 490 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 IL25Q9H293 177 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 RNPEPQ9H4A4 650 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 MRPL11Q9Y3B7 192 aaKnown RBP10.87□□□□□ -0.67
VCL-204ENST00000472585 SUPT16HQ9Y5B9 1047 aaKnown RBP10.87□□□□□ -0.67
VCL-204ENST00000472585 KMT2EQ8IZD2 1858 aa10.87□□□□□ -0.67
VCL-204ENST00000472585 KIAA1217Q5T5P2 1943 aa10.86□□□□□ -0.67
VCL-204ENST00000472585 GGPS1O95749 300 aa10.86□□□□□ -0.67
VCL-204ENST00000472585 PCP11498 1178 aaKnown RBP10.86□□□□□ -0.67
VCL-204ENST00000472585 UBA1P22314 1058 aaKnown RBP10.86□□□□□ -0.67
VCL-204ENST00000472585 DLX2Q07687 328 aaPredicted RBP10.86□□□□□ -0.67
VCL-204ENST00000472585 SMAD4Q13485 552 aaKnown RBP10.86□□□□□ -0.67
VCL-204ENST00000472585 PGM5Q15124 567 aa10.86□□□□□ -0.67
VCL-204ENST00000472585 SPATA33Q96N06 139 aa10.86□□□□□ -0.67
VCL-204ENST00000472585 IGFLR1Q9H665 355 aa10.86□□□□□ -0.67
VCL-204ENST00000472585 CD207Q9UJ71 328 aa10.86□□□□□ -0.67
VCL-204ENST00000472585 ATG2AQ2TAZ0 1938 aa10.86□□□□□ -0.67
VCL-204ENST00000472585 FAM186AA6NE01 2351 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 ZNF213O14771 459 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 CTNNB1P35222 781 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 ADAM17P78536 824 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 MRPS9P82933 396 aaKnown RBP10.85□□□□□ -0.67
VCL-204ENST00000472585 ZXDAP98168 799 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 SEMA3FQ13275 785 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 SEC23AQ15436 765 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 CTC1Q2NKJ3 1217 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 ASPRV1Q53RT3 343 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 SEPT8Q92599 483 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 RILPL2Q969X0 211 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 C11orf84Q9BUA3 381 aaPredicted RBP10.85□□□□□ -0.67
VCL-204ENST00000472585 LMAN2LQ9H0V9 348 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 KAT14Q9H8E8 782 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 SENP2Q9HC62 589 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 SETD4Q9NVD3 440 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 MAD2L2Q9UI95 211 aa10.85□□□□□ -0.67
VCL-204ENST00000472585 C17orf102A2RUQ5 167 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 TRIM6-TRIM34B2RNG4 842 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 H3BRB1 525 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 CYTH3O43739 400 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 LGALS2P05162 132 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 RB1P06400 928 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 CTSHP09668 335 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 PARP1P09874 1014 aaKnown RBP10.84□□□□□ -0.67
VCL-204ENST00000472585 SMIM10L2AP0DMW4 78 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 SMIM10L2BP0DMW5 78 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 GTF2F1P35269 517 aaKnown RBP eCLIP10.84□□□□□ -0.67
VCL-204ENST00000472585 NDUFV1P49821 464 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 HYAL1Q12794 435 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 CAMK1Q14012 370 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 MAMSTRQ6ZN01 415 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 CYB5R4Q7L1T6 521 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 ERMP1Q7Z2K6 904 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 TICAM2Q86XR7 235 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 PLEKHM2Q8IWE5 1019 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 FIBCD1Q8N539 461 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 ATP6V0A1Q93050 837 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 PPP2R3CQ969Q6 453 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 AMNQ9BXJ7 453 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 IFIH1Q9BYX4 1025 aaKnown RBP10.84□□□□□ -0.67
VCL-204ENST00000472585 LNPKQ9C0E8 428 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 RNF41Q9H4P4 317 aaPredicted RBP10.84□□□□□ -0.67
VCL-204ENST00000472585 TUT1Q9H6E5 874 aaKnown RBP10.84□□□□□ -0.67
VCL-204ENST00000472585 RWDD3Q9Y3V2 267 aa10.84□□□□□ -0.67
VCL-204ENST00000472585 PALM3A6NDB9 673 aaPredicted RBP10.83□□□□□ -0.68
VCL-204ENST00000472585 KLRF2D3W0D1 207 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 ZBTB5O15062 677 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 GRM6O15303 877 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 DHX16O60231 1041 aaKnown RBP10.83□□□□□ -0.68
VCL-204ENST00000472585 CSPG5O95196 566 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 CHRNA1P02708 482 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 SIGLEC14Q08ET2 396 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 HDAC1Q13547 482 aaPredicted RBP10.83□□□□□ -0.68
VCL-204ENST00000472585 CWC27Q6UX04 472 aaKnown RBP10.83□□□□□ -0.68
VCL-204ENST00000472585 IQCA1Q86XH1 822 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 TRIM50Q86XT4 487 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 IL17RAQ96F46 866 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 PIGSQ96S52 555 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 PCDHA1Q9Y5I3 950 aa10.83□□□□□ -0.68
VCL-204ENST00000472585 SPATA31C2B4DYI2 1134 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 H0Y858 1186 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 LINC01565O15544 149 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 TBX10O75333 385 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 TGFB3P10600 412 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 AVPR2P30518 371 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 BMPR1AP36894 532 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 CCDC178Q5BJE1 867 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 FAM26DQ5JW98 314 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 RUFY4Q6ZNE9 571 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 CYFIP1Q7L576 1253 aa10.82□□□□□ -0.68
VCL-204ENST00000472585 FCHSD1Q86WN1 690 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms