RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 KIAA0391O15091 583 aaKnown RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 ABL2P42684 1182 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 RWDD2BP57060 319 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 GOLGA8FQ08AF8 430 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 GOLGA8DPQ0D2H9 430 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 UBE4AQ14139 1066 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 TMEM63BQ5T3F8 832 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 MICALCLQ6ZW33 695 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 KIAA1328Q86T90 577 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 C12orf56Q8IXR9 622 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 TRIM22Q8IYM9 498 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 UTP4Q969X6 686 aaKnown RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 SETDB2Q96T68 719 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 LRMDAQ9H2I8 198 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 DPH5Q9H2P9 285 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 SETD1BQ9UPS6 1966 aaKnown RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 GOLGA8AA7E2F4 631 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 PTP4A2Q12974 167 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 MTMR3Q13615 1198 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 DIXDC1Q155Q3 683 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 TTC38Q5R3I4 469 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 COL23A1Q86Y22 540 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 FAM212AQ96EL1 285 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 ROPN1BQ9BZX4 212 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 ROPN1Q9HAT0 212 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 LZTFL1Q9NQ48 299 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 TFCP2L1Q9NZI6 479 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 GMNCA6NCL1 334 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 RPN1P04843 607 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 CDR1P51861 262 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 GNGT1P63211 74 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SIX1Q15475 284 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 CLUL1Q15846 466 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 EAPPQ56P03 285 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 PPP1R18Q6NYC8 613 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 RUFY4Q6ZNE9 571 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 CD101Q93033 1021 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 XPO6Q96QU8 1125 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 CDCA7Q9BWT1 371 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SEMA6BQ9H3T3 888 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 NHEJ1Q9H9Q4 299 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 AGPAT5Q9NUQ2 364 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 ANKFY1Q9P2R3 1169 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 CARSP49589 748 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 PTENP60484 403 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SPIRE1Q08AE8 756 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 GIT2Q14161 759 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SLC35C1Q96A29 364 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 KAT6BQ8WYB5 2073 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 FAM187AA6NFU0 413 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 ADORA1P30542 326 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 GRM4Q14833 912 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 CCDC122Q5T0U0 273 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 MTHFD1LQ6UB35 978 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SND1Q7KZF4 910 aaKnown RBP eCLIP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 FBXO33Q7Z6M2 555 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 ZBTB9Q96C00 473 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 NEUROG2Q9H2A3 272 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 ST6GALNAC4Q9H4F1 302 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 RIOX1Q9H6W3 641 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 GOPCQ9HD26 462 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 BICDL2A1A5D9 508 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 TACC1O75410 805 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 KIF4AO95239 1232 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 AGTP01019 485 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 VIMP08670 466 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SCG2P13521 617 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SSR1P43307 286 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 KIF11P52732 1056 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 INPP5DQ92835 1189 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SCLT1Q96NL6 688 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 TRIM6Q9C030 488 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 ABT1Q9ULW3 272 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SSX2IPQ9Y2D8 614 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 GDAQ9Y2T3 454 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 TRIM21P19474 475 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 YARSP54577 528 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 KIF5AQ12840 1032 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SLC7A6OSQ96CW6 309 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 MPHOSPH6Q99547 160 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 TMEM106CQ9BVX2 250 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 FOXP3Q9BZS1 431 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 GOLGA6L10A6NI86 522 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 PSMA7O14818 248 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SMNDC1O75940 238 aaKnown RBP eCLIP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 GNAZP19086 355 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 ZNF76P36508 570 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 RTN1Q16799 776 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 NOP9Q86U38 636 aaKnown RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 MMADHCQ9H3L0 296 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-220ENST00000471834 HDAC6Q9UBN7 1215 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 SYNPO2Q9UMS6 1093 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 ZNF532Q9HCE3 1301 aa5.87□□□□□ -1.47
SYNE1-220ENST00000471834 ATAD5Q96QE3 1844 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CCT8L1PA6NM43 557 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 NDUFAB1O14561 156 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 SCTRP47872 440 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 PDCLQ13371 301 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 C11orf63Q6NUN7 778 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms