RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 KAT2BQ92831 832 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 SMARCE1Q969G3 411 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 ALKBH8Q96BT7 664 aaKnown RBP5.65□□□□□ -1.5
COL3A1-205ENST00000470167 TBATAQ96M53 351 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 CCT7Q99832 543 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 JPH2Q9BR39 696 aaPredicted RBP5.65□□□□□ -1.5
COL3A1-205ENST00000470167 OSBPL2Q9H1P3 480 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 KCTD10Q9H3F6 313 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 BRD9Q9H8M2 597 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 GPAMQ9HCL2 828 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 TIMMDC1Q9NPL8 285 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 PFDN2Q9UHV9 154 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 ATPIF1Q9UII2 106 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 GRID1Q9ULK0 1009 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 EFR3BQ9Y2G0 817 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 ATP11BQ9Y2G3 1177 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 USP20Q9Y2K6 914 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 ZNF711Q9Y462 761 aa5.65□□□□□ -1.5
COL3A1-205ENST00000470167 SOS2Q07890 1332 aaPredicted RBP5.65□□□□□ -1.51
COL3A1-205ENST00000470167 ZMYM3Q14202 1370 aa5.65□□□□□ -1.51
COL3A1-205ENST00000470167 BICRAQ9NZM4 1560 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 PNMA6FA0A0J9YX94 578 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 A0A1B0GTH6 734 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 TRIM64A6NGJ6 449 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 TRIM64BA6NI03 449 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 GNAT3A8MTJ3 354 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 TMCC2O75069 709 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 USP2O75604 605 aaPredicted RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 GFPT2O94808 682 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 TMCC1O94876 653 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 INMTO95050 263 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 MAP3K6O95382 1288 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 VIMP08670 466 aaKnown RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 H2AFXP16104 143 aaPredicted RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 MSX1P28360 303 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 EPS15P42566 896 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 LIMK1P53667 647 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 RARSP54136 660 aaKnown RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 DSTNP60981 165 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 PFKPQ01813 784 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 GBE1Q04446 702 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 TRIM28Q13263 835 aaKnown RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 PPP2R5CQ13362 524 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 LAMC2Q13753 1193 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 SEPT6Q14141 434 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 C15orf59Q2T9L4 293 aaPredicted RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 CCDC153Q494R4 210 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 C8orf34Q49A92 452 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 ARSJQ5FYB0 599 aaPredicted RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 CFAP157Q5JU67 520 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 FAM83BQ5T0W9 1011 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 IER5Q5VY09 327 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 TWF2Q6IBS0 349 aaKnown RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 NCAPH2Q6IBW4 605 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 CORO6Q6QEF8 472 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 BTNL9Q6UXG8 535 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 Q6ZNB5 142 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 LRRC69Q6ZNQ3 347 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 MAATS1Q7Z4T9 603 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 MRPL10Q7Z7H8 261 aaKnown RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 NLRP10Q86W26 655 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 DDX42Q86XP3 938 aaKnown RBP eCLIP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 CCDC83Q8IWF9 413 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 RTKN2Q8IZC4 609 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 DEPTORQ8TB45 409 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 MDM1Q8TC05 714 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 FNIP1Q8TF40 1166 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 SPDL1Q96EA4 605 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 C16orf45Q96MC5 204 aaPredicted RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 ZFP42Q96MM3 310 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 COG8Q96MW5 612 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 ZIC5Q96T25 663 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 GMLQ99445 158 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 TRPV6Q9H1D0 765 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 GGNBP2Q9H3C7 697 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 SERHL2Q9H4I8 314 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 BICC1Q9H694 974 aaKnown RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 STARD7Q9NQZ5 370 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 PAPOLBQ9NRJ5 636 aaKnown RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 RNF19AQ9NV58 838 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 TAGLN3Q9UI15 199 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 DNMT3LQ9UJW3 386 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 FBXO10Q9UK96 956 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 DSEQ9UL01 958 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 KIAA1257Q9ULG3 409 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 ADAMTS8Q9UP79 889 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 CD2APQ9Y5K6 639 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 FHOD1Q9Y613 1164 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 GPC6Q9Y625 555 aaPredicted RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 EPN1Q9Y6I3 576 aaPredicted RBP5.64□□□□□ -1.51
COL3A1-205ENST00000470167 ZNF804BA4D1E1 1349 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 YEATS2Q9ULM3 1422 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 ATAD2BQ9ULI0 1458 aa5.64□□□□□ -1.51
COL3A1-205ENST00000470167 VIRMAQ69YN4 1812 aaKnown RBP5.63□□□□□ -1.51
COL3A1-205ENST00000470167 SYNJ2BP-COX16A0A087WUM0 186 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 IQANK1A0A1B0GTG1 560 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 TOR1BO14657 336 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 OPLAHO14841 1288 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 YKT6O15498 198 aa5.63□□□□□ -1.51
COL3A1-205ENST00000470167 RNF113AO15541 343 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms