RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CST5P28325 142 aaPredicted RBP16.69■□□□□ 0.26
COL9A3-209ENST00000469852 KCNA10Q16322 511 aa16.69■□□□□ 0.26
COL9A3-209ENST00000469852 GNASQ5JWF2 1037 aa16.69■□□□□ 0.26
COL9A3-209ENST00000469852 SLFN12Q8IYM2 578 aa16.69■□□□□ 0.26
COL9A3-209ENST00000469852 DIS3LQ8TF46 1054 aaKnown RBP16.69■□□□□ 0.26
COL9A3-209ENST00000469852 PCYT2Q99447 389 aa16.69■□□□□ 0.26
COL9A3-209ENST00000469852 TTC12Q9H892 705 aaPredicted RBP16.69■□□□□ 0.26
COL9A3-209ENST00000469852 CHMP5Q9NZZ3 219 aa16.69■□□□□ 0.26
COL9A3-209ENST00000469852 ELP1O95163 1332 aa16.69■□□□□ 0.26
COL9A3-209ENST00000469852 POTEMA6NI47 508 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 NOP56O00567 594 aaKnown RBP16.68■□□□□ 0.26
COL9A3-209ENST00000469852 ATG7O95352 703 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 BAG4O95429 457 aaKnown RBP16.68■□□□□ 0.26
COL9A3-209ENST00000469852 ZNF286BP0CG31 522 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 TCF7P36402 384 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-209ENST00000469852 NASPP49321 788 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-209ENST00000469852 CPT1AP50416 773 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 GRIN1Q05586 938 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 PPP2R5CQ13362 524 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 ZNF746Q6NUN9 644 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-209ENST00000469852 ABHD15Q6UXT9 468 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 RNF180Q86T96 592 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 TRIM50Q86XT4 487 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 PPP1R13LQ8WUF5 828 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 ZNF396Q96N95 335 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-209ENST00000469852 SPC25Q9HBM1 224 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 POLR3EQ9NVU0 708 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 PCDHA12Q9UN75 941 aa16.68■□□□□ 0.26
COL9A3-209ENST00000469852 ASGR1P07306 291 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 MYL3P08590 195 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 MARCKSP29966 332 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-209ENST00000469852 TECP42680 631 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 PURAQ00577 322 aaKnown RBP16.67■□□□□ 0.26
COL9A3-209ENST00000469852 KRT76Q01546 638 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 SLC39A14Q15043 492 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 UTP14CQ5TAP6 766 aaKnown RBP16.67■□□□□ 0.26
COL9A3-209ENST00000469852 NCAPH2Q6IBW4 605 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 CXCL17Q6UXB2 119 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 CCDC60Q8IWA6 550 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-209ENST00000469852 LINC00301Q8NCQ3 95 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 SEPT1Q8WYJ6 367 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 KAT2BQ92831 832 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 C16orf70Q9BSU1 422 aa16.67■□□□□ 0.26
COL9A3-209ENST00000469852 IGKV6D-21A0A0A0MT36 114 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 PP2D1A8MPX8 630 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 DNM1LO00429 736 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 LAD1O00515 517 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 LGALS2P05162 132 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 SUPT20HL2P0C7V6 817 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 PRPHP41219 470 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 FXR2P51116 673 aaKnown RBP eCLIP16.66■□□□□ 0.26
COL9A3-209ENST00000469852 ACLYP53396 1101 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 UGCGQ16739 394 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 DGKDQ16760 1214 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 MIER3Q7Z3K6 550 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 ARRDC4Q8NCT1 418 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 FERMT2Q96AC1 680 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 DISC1Q9NRI5 854 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 FBXO2Q9UK22 296 aaPredicted RBP16.66■□□□□ 0.26
COL9A3-209ENST00000469852 DNAH12Q6ZR08 3092 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 SCN10AQ9Y5Y9 1956 aa16.66■□□□□ 0.26
COL9A3-209ENST00000469852 VWA3AA6NCI4 1184 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 WDR64B1ANS9 1081 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 PPFIA4O75335 1185 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 LGR5O75473 907 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 PSMC6P62333 389 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 SWSAP1Q6NVH7 229 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 SMAP1Q8IYB5 467 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-209ENST00000469852 IGSF22Q8N9C0 903 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 CLIC6Q96NY7 704 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 CEP131Q9UPN4 1083 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 PHF24Q9UPV7 400 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 SAMM50Q9Y512 469 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 PCDHA10Q9Y5I2 948 aa16.65■□□□□ 0.26
COL9A3-209ENST00000469852 A0A1W2PQ45 241 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-209ENST00000469852 A0A1W2PQY0 241 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 KBTBD13C9JR72 458 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 YEATS4O95619 227 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 BMP15O95972 392 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 NCLP19338 710 aaKnown RBP16.64■□□□□ 0.25
COL9A3-209ENST00000469852 ATP4AP20648 1035 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 CDC25AP30304 524 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 JAK3P52333 1124 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 STK38Q15208 465 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 HABP4Q5JVS0 413 aaKnown RBP16.64■□□□□ 0.25
COL9A3-209ENST00000469852 ARL6IP4Q66PJ3 421 aaKnown RBP16.64■□□□□ 0.25
COL9A3-209ENST00000469852 MIS18BP1Q6P0N0 1132 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 DTHD1Q6ZMT9 781 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 PCSK9Q8NBP7 692 aaKnown RBP16.64■□□□□ 0.25
COL9A3-209ENST00000469852 BANK1Q8NDB2 785 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 TNPO1Q92973 898 aaKnown RBP16.64■□□□□ 0.25
COL9A3-209ENST00000469852 TSEN34Q9BSV6 310 aaKnown RBP16.64■□□□□ 0.25
COL9A3-209ENST00000469852 GDPD2Q9HCC8 539 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 RGL1Q9NZL6 768 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 WRAP73Q9P2S5 460 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-209ENST00000469852 TCEAL9Q9UHQ7 104 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 EMSYQ7Z589 1322 aa16.64■□□□□ 0.25
COL9A3-209ENST00000469852 MYH9P35579 1960 aaKnown RBP16.64■□□□□ 0.25
COL9A3-209ENST00000469852 MOXD2PA6NHM9 499 aa16.63■□□□□ 0.25
COL9A3-209ENST00000469852 SPTLC2O15270 562 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms