RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 TRMT1LQ7Z2T5 733 aaKnown RBP13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 NEK8Q86SG6 692 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 FAM126BQ8IXS8 530 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 SLC43A3Q8NBI5 491 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 FBXO18Q8NFZ0 1043 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 TOX2Q96NM4 488 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 C16orf70Q9BSU1 422 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 KATNAL1Q9BW62 490 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 PPP1R12CQ9BZL4 782 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 TUT1Q9H6E5 874 aaKnown RBP13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 HDAC6Q9UBN7 1215 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 DDX25Q9UHL0 483 aaKnown RBP13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 SAMM50Q9Y512 469 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 NFASCO94856 1347 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 H3BQV1 296 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 BACH1O14867 736 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 SLC37A4O43826 429 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 GAS7O60861 476 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 CCNE2O96020 404 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 F2P00734 622 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 ZNF200P98182 395 aaPredicted RBP13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 PTGISQ16647 500 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 GDF6Q6KF10 455 aaPredicted RBP13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 NFRKBQ6P4R8 1299 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 BADQ92934 168 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 TNFRSF25Q93038 417 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 LENG9Q96B70 501 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 AZI2Q9H6S1 392 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 ZNF215Q9UL58 517 aaPredicted RBP13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 KIF3AQ9Y496 699 aa13.63□□□□□ -0.23
SHROOM3-202ENST00000466541 MYH9P35579 1960 aaKnown RBP13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 CYP3A7-CYP3A51PA0A087WV96 503 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 DHX15O43143 795 aaKnown RBP13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 CD4P01730 458 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 HOXD8P13378 290 aaPredicted RBP13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 CYP3A7P24462 503 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 ITGB8P26012 769 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 CYP2C18P33260 490 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 Q4G0T1 1027 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 LRCH2Q5VUJ6 765 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 HSCBQ8IWL3 235 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 RNPEPQ9H4A4 650 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 TBC1D22BQ9NU19 505 aa13.62□□□□□ -0.23
SHROOM3-202ENST00000466541 KIF28PB7ZC32 967 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 K7ELQ4 463 aaPredicted RBP13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 SMIM10L2AP0DMW4 78 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 SMIM10L2BP0DMW5 78 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 IGBP1P78318 339 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 LARP1BQ659C4 914 aaKnown RBP13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 SWSAP1Q6NVH7 229 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 MIS18BP1Q6P0N0 1132 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 POTEDQ86YR6 584 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 SPRYD3Q8NCJ5 442 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 TEKT3Q9BXF9 490 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 SEZ6LQ9BYH1 1024 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 UBE2OQ9C0C9 1292 aaKnown RBP13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 HIPK3Q9H422 1215 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 SMARCAD1Q9H4L7 1026 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 SETD4Q9NVD3 440 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 COLQQ9Y215 455 aaPredicted RBP13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 UMODL1Q5DID0 1318 aa13.61□□□□□ -0.23
SHROOM3-202ENST00000466541 WDR81Q562E7 1941 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 LTBP2Q14767 1821 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 C17orf102A2RUQ5 167 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 HAS3O00219 553 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 WNT7AO00755 349 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 KIAA0355O15063 1070 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 TIMP1P01033 207 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 SUPT20HL2P0C7V6 817 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 MCM7P33993 719 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 STAT5BP51692 787 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 CCL23P55773 120 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 KRT76Q01546 638 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 ZNF174Q15697 407 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 FAM160B1Q5W0V3 765 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 CKAP2LQ8IYA6 745 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 SLC5A5Q92911 643 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 ATP6V0A1Q93050 837 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 PCYT2Q99447 389 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 NAP1L4Q99733 375 aaKnown RBP13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 FOXP1Q9H334 677 aaPredicted RBP13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 UNC45AQ9H3U1 944 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 ERAP1Q9NZ08 941 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 GTF2IRD1Q9UHL9 959 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 TBX21Q9UL17 535 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 TRPC6Q9Y210 931 aa13.6□□□□□ -0.23
SHROOM3-202ENST00000466541 VPS37CA5D8V6 355 aaPredicted RBP13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 RBAK-RBAKDNI3L0D1 243 aa13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 BAG4O95429 457 aaKnown RBP13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 PSAPP07602 524 aa13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 HSP90AA1P07900 732 aaKnown RBP13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 GCFC2P16383 781 aaKnown RBP13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 PTPN11Q06124 597 aaPredicted RBP13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 CUL4AQ13619 759 aa13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 HIC1Q14526 733 aa13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 PPP4R3AQ6IN85 833 aa13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 ZNF746Q6NUN9 644 aaPredicted RBP13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 PDXDC2PQ6P474 469 aa13.59□□□□□ -0.23
SHROOM3-202ENST00000466541 MOXD1Q6UVY6 613 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms