RNA–Protein interactions for RNA: ENST00000465756.5

NPHP3-203, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 3,852 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-203ENST00000465756 TBCKQ8TEA7 893 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 ZNF302Q9NR11 478 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 DDX25Q9UHL0 483 aaKnown RBP12.16□□□□□ -0.46
NPHP3-203ENST00000465756 PCDHA10Q9Y5I2 948 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 LETM2Q2VYF4 491 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 OTUD6AQ7L8S5 288 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 AGO4Q9HCK5 861 aaKnown RBP12.16□□□□□ -0.46
NPHP3-203ENST00000465756 OPLAHO14841 1288 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 FGBP02675 491 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 IER5Q5VY09 327 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 MCTP1Q6DN14 999 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 PLPPR4Q7Z2D5 763 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 TDHQ8IZJ6 230 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 SEPT8Q92599 483 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 COPS5Q92905 334 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 RNPC3Q96LT9 517 aaKnown RBP12.16□□□□□ -0.46
NPHP3-203ENST00000465756 TBC1D32Q96NH3 1257 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 SCLT1Q96NL6 688 aa12.16□□□□□ -0.46
NPHP3-203ENST00000465756 TCF7P36402 384 aaPredicted RBP12.15□□□□□ -0.46
NPHP3-203ENST00000465756 MAGEA10P43363 369 aaPredicted RBP12.15□□□□□ -0.46
NPHP3-203ENST00000465756 PPP1R12CQ9BZL4 782 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 IL23AQ9NPF7 189 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 SELPP16109 830 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 SYN1P17600 705 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 ME3Q16798 604 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 CCSAPQ6IQ19 270 aaPredicted RBP12.15□□□□□ -0.46
NPHP3-203ENST00000465756 FAM126BQ8IXS8 530 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 DIS3L2Q8IYB7 885 aaKnown RBP12.15□□□□□ -0.46
NPHP3-203ENST00000465756 NECAB1Q8N987 351 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 IL31RAQ8NI17 732 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 PDE4DIPQ5VU43 2346 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 ZBBXA8MT70 800 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 CDK7P50613 346 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 KRT40Q6A162 431 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 SLC43A3Q8NBI5 491 aa12.15□□□□□ -0.46
NPHP3-203ENST00000465756 NSUN7Q8NE18 718 aaKnown RBP12.15□□□□□ -0.46
NPHP3-203ENST00000465756 ACTR2P61160 394 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 MRPS9P82933 396 aaKnown RBP12.14□□□□□ -0.47
NPHP3-203ENST00000465756 PKN1Q16512 942 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 SLC35G1Q2M3R5 365 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 GPR20Q99678 358 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 FOXP1Q9H334 677 aaPredicted RBP12.14□□□□□ -0.47
NPHP3-203ENST00000465756 GTF2IRD1Q9UHL9 959 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 HOXD8P13378 290 aaPredicted RBP12.14□□□□□ -0.47
NPHP3-203ENST00000465756 Q4G0T1 1027 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 PIK3AP1Q6ZUJ8 805 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 APBB2Q92870 758 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 PHF20Q9BVI0 1012 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 TMEM260Q9NX78 707 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 MYADML2A6NDP7 307 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 CLK2P49760 499 aaKnown RBP12.14□□□□□ -0.47
NPHP3-203ENST00000465756 MDM2Q00987 491 aaPredicted RBP12.14□□□□□ -0.47
NPHP3-203ENST00000465756 HAUS3Q68CZ6 603 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 NME8Q8N427 588 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 USP38Q8NB14 1042 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 BBXQ8WY36 941 aaPredicted RBP12.14□□□□□ -0.47
NPHP3-203ENST00000465756 KCNG1Q9UIX4 513 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 MCM3APO60318 1980 aa12.14□□□□□ -0.47
NPHP3-203ENST00000465756 DDX39AO00148 427 aaKnown RBP12.13□□□□□ -0.47
NPHP3-203ENST00000465756 BAIAP3O94812 1187 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 MMP1P03956 469 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 INO80BQ9C086 356 aaPredicted RBP12.13□□□□□ -0.47
NPHP3-203ENST00000465756 TBX21Q9UL17 535 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 ASTN1O14525 1302 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 CCNT1O60563 726 aaKnown RBP12.13□□□□□ -0.47
NPHP3-203ENST00000465756 ARIH2O95376 493 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 PSMC6P62333 389 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 NCBP1Q09161 790 aaKnown RBP12.13□□□□□ -0.47
NPHP3-203ENST00000465756 BADQ92934 168 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 BACH2Q9BYV9 841 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 POTEB3A0JP26 581 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 LAD1O00515 517 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 KCNA2P16389 499 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 CALCRLQ16602 461 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 INF2Q27J81 1249 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 POTEBQ6S5H4 581 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 PGBD1Q96JS3 809 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 LARP6Q9BRS8 491 aaKnown RBP12.13□□□□□ -0.47
NPHP3-203ENST00000465756 DISC1Q9NRI5 854 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 SMCHD1A6NHR9 2005 aa12.13□□□□□ -0.47
NPHP3-203ENST00000465756 NEMFO60524 1076 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 SMIM10L2AP0DMW4 78 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 SMIM10L2BP0DMW5 78 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 MNX1P50219 401 aaPredicted RBP12.12□□□□□ -0.47
NPHP3-203ENST00000465756 ATP8B4Q8TF62 1192 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 HDAC6Q9UBN7 1215 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 KCNJ14Q9UNX9 436 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 SLC4A7Q9Y6M7 1214 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 TMEM265A0A087WTH1 108 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.12□□□□□ -0.47
NPHP3-203ENST00000465756 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.12□□□□□ -0.47
NPHP3-203ENST00000465756 CARNS1A5YM72 827 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 GAS2O43903 313 aaKnown RBP12.12□□□□□ -0.47
NPHP3-203ENST00000465756 ZNF286BP0CG31 522 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 CYP2C9P11712 490 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 RILPL1Q5EBL4 403 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 LRRC8DQ7L1W4 858 aa12.12□□□□□ -0.47
NPHP3-203ENST00000465756 APBB1IPQ7Z5R6 666 aaPredicted RBP12.12□□□□□ -0.47
NPHP3-203ENST00000465756 HABP4Q5JVS0 413 aaKnown RBP12.12□□□□□ -0.47
NPHP3-203ENST00000465756 CDK5RAP3Q96JB5 506 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms