RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 EPB41L1Q9H4G0 881 aa6.07□□□□□ -1.44
USH2A-203ENST00000463147 DLL4Q9NR61 685 aa6.07□□□□□ -1.44
USH2A-203ENST00000463147 TMA7Q9Y2S6 64 aaKnown RBP6.07□□□□□ -1.44
USH2A-203ENST00000463147 MRVI1Q9Y6F6 885 aa6.07□□□□□ -1.44
USH2A-203ENST00000463147 KRIT1O00522 736 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 CNOT4O95628 575 aaKnown RBP6.06□□□□□ -1.44
USH2A-203ENST00000463147 SMAD2Q15796 467 aaKnown RBP6.06□□□□□ -1.44
USH2A-203ENST00000463147 NRN1LQ496H8 165 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 SOGA3Q5TF21 947 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 VASNQ6EMK4 673 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 NLRP10Q86W26 655 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 TTLL11Q8NHH1 800 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 PPP1R14AQ96A00 147 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 CHFRQ96EP1 664 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 ZNF503Q96F45 646 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 AJUBAQ96IF1 538 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 ADOQ96SZ5 270 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 MYOTQ9UBF9 498 aa6.06□□□□□ -1.44
USH2A-203ENST00000463147 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.06□□□□□ -1.44
USH2A-203ENST00000463147 KLF4O43474 513 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 ZNF202O95125 648 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 SCG5P05408 212 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 COMTP21964 271 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 LTBRP36941 435 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 TCTN3Q6NUS6 607 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 CHAMP1Q96JM3 812 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 CEP89Q96ST8 783 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 CSRNP2Q9H175 543 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 ZFR2Q9UPR6 939 aaKnown RBP6.05□□□□□ -1.44
USH2A-203ENST00000463147 NUB1Q9Y5A7 615 aa6.05□□□□□ -1.44
USH2A-203ENST00000463147 MRPL42Q9Y6G3 142 aaKnown RBP6.05□□□□□ -1.44
USH2A-203ENST00000463147 KLHL18O94889 574 aa6.04□□□□□ -1.44
USH2A-203ENST00000463147 FBXO21O94952 628 aa6.04□□□□□ -1.44
USH2A-203ENST00000463147 COL6A1P12109 1028 aa6.04□□□□□ -1.44
USH2A-203ENST00000463147 TMC5Q6UXY8 1006 aa6.04□□□□□ -1.44
USH2A-203ENST00000463147 ZNF575Q86XF7 245 aa6.04□□□□□ -1.44
USH2A-203ENST00000463147 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.04□□□□□ -1.44
USH2A-203ENST00000463147 CPLX3Q8WVH0 158 aa6.04□□□□□ -1.44
USH2A-203ENST00000463147 GPATCH3Q96I76 525 aa6.04□□□□□ -1.44
USH2A-203ENST00000463147 FOXS1O43638 330 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 SSBP05455 408 aaKnown RBP eCLIP6.03□□□□□ -1.44
USH2A-203ENST00000463147 SNRPB2P08579 225 aaKnown RBP6.03□□□□□ -1.44
USH2A-203ENST00000463147 INHBCP55103 352 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 PTH1RQ03431 593 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 USP39Q53GS9 565 aaKnown RBP6.03□□□□□ -1.44
USH2A-203ENST00000463147 ANKS3Q6ZW76 656 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 DTX3Q8N9I9 347 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 RCBTB1Q8NDN9 531 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 NUDT10Q8NFP7 164 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 HNRNPLLQ8WVV9 542 aaKnown RBP6.03□□□□□ -1.44
USH2A-203ENST00000463147 NUDT11Q96G61 164 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 SHDQ96IW2 340 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 CLDND1Q9NY35 253 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 STRIP2Q9ULQ0 834 aa6.03□□□□□ -1.44
USH2A-203ENST00000463147 FAM221BA6H8Z2 402 aa6.02□□□□□ -1.45
USH2A-203ENST00000463147 PPFIA2O75334 1257 aa6.02□□□□□ -1.45
USH2A-203ENST00000463147 LSM12Q3MHD2 195 aaKnown RBP6.02□□□□□ -1.45
USH2A-203ENST00000463147 CCDC103Q8IW40 242 aa6.02□□□□□ -1.45
USH2A-203ENST00000463147 CKAP2LQ8IYA6 745 aa6.02□□□□□ -1.45
USH2A-203ENST00000463147 GNRHR2Q96P88 292 aa6.02□□□□□ -1.45
USH2A-203ENST00000463147 TRIM8Q9BZR9 551 aa6.02□□□□□ -1.45
USH2A-203ENST00000463147 ASH2LQ9UBL3 628 aa6.02□□□□□ -1.45
USH2A-203ENST00000463147 PCDHA2Q9Y5H9 948 aa6.02□□□□□ -1.45
USH2A-203ENST00000463147 KNG1P01042 644 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 CSF2RBP32927 897 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 ECI1P42126 302 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 NBPF6Q5VWK0 638 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 PPIL6Q8IXY8 311 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 FAM169BQ8N8A8 192 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 FAM89AQ96GI7 184 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 RNPC3Q96LT9 517 aaKnown RBP6.01□□□□□ -1.45
USH2A-203ENST00000463147 NBPF4Q96M43 638 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 LRRC37BQ96QE4 947 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 KATNBL1Q9H079 304 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 KANSL2Q9H9L4 492 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 MSL2Q9HCI7 577 aa6.01□□□□□ -1.45
USH2A-203ENST00000463147 NCLP19338 710 aaKnown RBP6□□□□□ -1.45
USH2A-203ENST00000463147 RAC3P60763 192 aa6□□□□□ -1.45
USH2A-203ENST00000463147 CYP4F3Q08477 520 aa6□□□□□ -1.45
USH2A-203ENST00000463147 RAB33AQ14088 237 aa6□□□□□ -1.45
USH2A-203ENST00000463147 RASA3Q14644 834 aa6□□□□□ -1.45
USH2A-203ENST00000463147 USP10Q14694 798 aaKnown RBP6□□□□□ -1.45
USH2A-203ENST00000463147 POLNQ7Z5Q5 900 aa6□□□□□ -1.45
USH2A-203ENST00000463147 TAX1BP1Q86VP1 789 aa6□□□□□ -1.45
USH2A-203ENST00000463147 ANKRD13AQ8IZ07 590 aa6□□□□□ -1.45
USH2A-203ENST00000463147 KREMEN2Q8NCW0 462 aa6□□□□□ -1.45
USH2A-203ENST00000463147 BTN2A2Q8WVV5 523 aa6□□□□□ -1.45
USH2A-203ENST00000463147 MKL1Q969V6 931 aa6□□□□□ -1.45
USH2A-203ENST00000463147 NEIL1Q96FI4 390 aaPredicted RBP6□□□□□ -1.45
USH2A-203ENST00000463147 SLC6A20Q9NP91 592 aa6□□□□□ -1.45
USH2A-203ENST00000463147 LRP2BPQ9P2M1 347 aa6□□□□□ -1.45
USH2A-203ENST00000463147 TMEFF2Q9UIK5 374 aaPredicted RBP6□□□□□ -1.45
USH2A-203ENST00000463147 NARSO43776 548 aaKnown RBP5.99□□□□□ -1.45
USH2A-203ENST00000463147 CUTAO60888 179 aa5.99□□□□□ -1.45
USH2A-203ENST00000463147 RAD17O75943 681 aa5.99□□□□□ -1.45
USH2A-203ENST00000463147 ENO2P09104 434 aaPredicted RBP5.99□□□□□ -1.45
USH2A-203ENST00000463147 NFE2L2Q16236 605 aa5.99□□□□□ -1.45
USH2A-203ENST00000463147 AGBL4Q5VU57 503 aa5.99□□□□□ -1.45
USH2A-203ENST00000463147 CELF2-AS1Q8N7Q2 184 aa5.99□□□□□ -1.45
USH2A-203ENST00000463147 ANAPC16Q96DE5 110 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms