RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 SSRP1Q08945 709 aaKnown RBP18.38■□□□□ 0.53
COL7A1-203ENST00000459756 TRIM71Q2Q1W2 868 aaKnown RBP18.38■□□□□ 0.53
COL7A1-203ENST00000459756 CRYGNQ8WXF5 182 aa18.38■□□□□ 0.53
COL7A1-203ENST00000459756 GUCD1Q96NT3 240 aa18.38■□□□□ 0.53
COL7A1-203ENST00000459756 SDF4Q9BRK5 362 aa18.38■□□□□ 0.53
COL7A1-203ENST00000459756 LARP6Q9BRS8 491 aaKnown RBP18.38■□□□□ 0.53
COL7A1-203ENST00000459756 FTOQ9C0B1 505 aaKnown RBP eCLIP18.38■□□□□ 0.53
COL7A1-203ENST00000459756 TTYH1Q9H313 450 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-203ENST00000459756 SLC9A2Q9UBY0 812 aa18.38■□□□□ 0.53
COL7A1-203ENST00000459756 NFASCO94856 1347 aa18.38■□□□□ 0.53
COL7A1-203ENST00000459756 ZBBXA8MT70 800 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 GRXCR1A8MXD5 290 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 CYP3A4P08684 503 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 ARP10275 920 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 RAB30Q15771 203 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 TIFAQ96CG3 184 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 IL17RAQ96F46 866 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 PBX4Q9BYU1 374 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 RNPEPQ9H4A4 650 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 AGO4Q9HCK5 861 aaKnown RBP18.37■□□□□ 0.53
COL7A1-203ENST00000459756 VPS54Q9P1Q0 977 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 CDH23Q9H251 3354 aa18.37■□□□□ 0.53
COL7A1-203ENST00000459756 DEXIO95424 95 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 STK3Q13188 491 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 ANKRD1Q15327 319 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 ZNF618Q5T7W0 954 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 FAM177A1Q8N128 213 aaPredicted RBP18.36■□□□□ 0.53
COL7A1-203ENST00000459756 GLG1Q92896 1179 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 WNT8BQ93098 351 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 SMARCAD1Q9H4L7 1026 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 SETD4Q9NVD3 440 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 ERAP1Q9NZ08 941 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 MSRAQ9UJ68 235 aa18.36■□□□□ 0.53
COL7A1-203ENST00000459756 EMSYQ7Z589 1322 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 NRCAMQ92823 1304 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 FAM86B1E9PN63 330 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 ADAMTS3O15072 1205 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 TREHO43280 583 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 CAND2O75155 1236 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 CDKL5O76039 1030 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 BAIAP3O94812 1187 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 CXCL10P02778 98 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 FAM86B2P0C5J1 330 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 THPOP40225 353 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 PBX2P40425 430 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 ITGB3BPQ13352 177 aaPredicted RBP18.35■□□□□ 0.53
COL7A1-203ENST00000459756 GPNMBQ14956 572 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 ZNF576Q9H609 170 aa18.35■□□□□ 0.53
COL7A1-203ENST00000459756 TET1Q8NFU7 2136 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 KAT6AQ92794 2004 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 IGLV3-22A0A075B6J6 115 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 LGR5O75473 907 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 ATP2A2P16615 1042 aaKnown RBP18.34■□□□□ 0.53
COL7A1-203ENST00000459756 NLRP5P59047 1200 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 ACTR2P61160 394 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 SETQ01105 290 aaPredicted RBP18.34■□□□□ 0.53
COL7A1-203ENST00000459756 TRAF7Q6Q0C0 670 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 PLA2G4DQ86XP0 818 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 LMBR1Q8WVP7 490 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 CDX2Q99626 313 aaPredicted RBP18.34■□□□□ 0.53
COL7A1-203ENST00000459756 SLKQ9H2G2 1235 aaPredicted RBP18.34■□□□□ 0.53
COL7A1-203ENST00000459756 AZI2Q9H6S1 392 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 TPCN1Q9ULQ1 816 aa18.34■□□□□ 0.53
COL7A1-203ENST00000459756 CHD9Q3L8U1 2897 aa18.33■□□□□ 0.53
COL7A1-203ENST00000459756 RSPH10B2B2RC85 870 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 IPO5O00410 1097 aaKnown RBP18.33■□□□□ 0.52
COL7A1-203ENST00000459756 PFKFB2O60825 505 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 NBNO60934 754 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 RSPH10BP0C881 870 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 ADAM17P78536 824 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 SCRN1Q12765 414 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 PPFIA1Q13136 1202 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 CNKSR3Q6P9H4 555 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 PHOSPHO2Q8TCD6 241 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 RASGRP4Q8TDF6 673 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 SLC9A7Q96T83 725 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 PCDHA4Q9UN74 947 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 PCDHA11Q9Y5I1 949 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 GBF1Q92538 1859 aa18.33■□□□□ 0.52
COL7A1-203ENST00000459756 MARK3P27448 753 aa18.32■□□□□ 0.52
COL7A1-203ENST00000459756 CIITAP33076 1130 aa18.32■□□□□ 0.52
COL7A1-203ENST00000459756 AK2P54819 239 aa18.32■□□□□ 0.52
COL7A1-203ENST00000459756 MBTPS1Q14703 1052 aa18.32■□□□□ 0.52
COL7A1-203ENST00000459756 GALNT17Q6IS24 598 aa18.32■□□□□ 0.52
COL7A1-203ENST00000459756 PLPPR4Q7Z2D5 763 aa18.32■□□□□ 0.52
COL7A1-203ENST00000459756 TNPO1Q92973 898 aaKnown RBP18.32■□□□□ 0.52
COL7A1-203ENST00000459756 PCYT2Q99447 389 aa18.32■□□□□ 0.52
COL7A1-203ENST00000459756 C22orf23Q9BZE7 217 aa18.32■□□□□ 0.52
COL7A1-203ENST00000459756 STK36Q9NRP7 1315 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 ABHD14A-ACY1A0A1B0GW23 586 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 EFCAB14O75071 495 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 ATG7O95352 703 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 SEC24BO95487 1268 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 SLC26A2P50443 739 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 USP11P51784 963 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 GRIK4Q16099 956 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 TAF2Q6P1X5 1199 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 DAGLBQ8NCG7 672 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 ZNF577Q9BSK1 485 aa18.31■□□□□ 0.52
COL7A1-203ENST00000459756 SLC28A3Q9HAS3 691 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms