RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 CEP72Q9P209 647 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 SSU72P8A0A1W2PR75 194 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 LRRC53A6NM62 1247 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 TCP10L2B9ZVM9 353 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 TBC1D12O60347 775 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 PLEKP08567 350 aaPredicted RBP16.65■□□□□ 0.26
LDLR-202ENST00000455727 KIF11P52732 1056 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 CYP27A1Q02318 531 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 DLGAP5Q15398 846 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 EPM2AIP1Q7L775 607 aaPredicted RBP16.65■□□□□ 0.26
LDLR-202ENST00000455727 UBXN6Q9BZV1 441 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 TFR2Q9UP52 801 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 TRAF3IP3Q9Y228 551 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 PCDHA13Q9Y5I0 950 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 IGLV3-22A0A075B6J6 115 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 ATP1A1P05023 1023 aaKnown RBP16.64■□□□□ 0.25
LDLR-202ENST00000455727 HOXA13P31271 388 aaPredicted RBP16.64■□□□□ 0.25
LDLR-202ENST00000455727 ZNF76P36508 570 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 EIF4A3P38919 411 aaKnown RBP16.64■□□□□ 0.25
LDLR-202ENST00000455727 ECE1P42892 770 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 PSMC6P62333 389 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 SPDYE2Q495Y8 402 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 CACNA2D4Q7Z3S7 1137 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 SPICE1Q8N0Z3 855 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 CHURC1Q8WUH1 139 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 SECISBP2LQ93073 1101 aaKnown RBP16.64■□□□□ 0.25
LDLR-202ENST00000455727 FUT8Q9BYC5 575 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 IFIH1Q9BYX4 1025 aaKnown RBP16.64■□□□□ 0.25
LDLR-202ENST00000455727 VPS33BQ9H267 617 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 ZBTB21Q9ULJ3 1066 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.64■□□□□ 0.25
LDLR-202ENST00000455727 CNTNAP1P78357 1384 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 CETN3O15182 167 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 ADAM9Q13443 819 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 ASTE1Q2TB18 679 aaPredicted RBP16.64■□□□□ 0.25
LDLR-202ENST00000455727 NELFCDQ8IXH7 590 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 TXLNBQ8N3L3 684 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 OGFOD1Q8N543 542 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 TTLL6Q8N841 843 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 TRIM58Q8NG06 486 aa16.64■□□□□ 0.25
LDLR-202ENST00000455727 RANBP17Q9H2T7 1088 aaKnown RBP16.64■□□□□ 0.25
LDLR-202ENST00000455727 ENC1O14682 589 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 PJA2O43164 708 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 EYA4O95677 639 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 CACNB1Q02641 598 aaPredicted RBP16.63■□□□□ 0.25
LDLR-202ENST00000455727 PABPC4Q13310 644 aaKnown RBP eCLIP16.63■□□□□ 0.25
LDLR-202ENST00000455727 LONRF2Q1L5Z9 754 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 KIAA1755Q5JYT7 1200 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 ACER1Q8TDN7 264 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 REEP2Q9BRK0 252 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 DEF6Q9H4E7 631 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 AKR1B10O60218 316 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 ERLIN1O75477 346 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 SASH3O75995 380 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 NOL4O94818 638 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 TFRCP02786 760 aaKnown RBP16.63■□□□□ 0.25
LDLR-202ENST00000455727 CKAP4Q07065 602 aaKnown RBP16.63■□□□□ 0.25
LDLR-202ENST00000455727 TERF2Q15554 542 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 KNOP1Q1ED39 458 aaKnown RBP16.63■□□□□ 0.25
LDLR-202ENST00000455727 BMT2Q1RMZ1 405 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 KRT26Q7Z3Y9 468 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 MTMR14Q8NCE2 650 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 CYP2W1Q8TAV3 490 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 CAMKK2Q96RR4 588 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 EIF2AK1Q9BQI3 630 aaKnown RBP16.63■□□□□ 0.25
LDLR-202ENST00000455727 SH2D4AQ9H788 454 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 TUFT1Q9NNX1 390 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 JRKLQ9Y4A0 524 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 DUSP10Q9Y6W6 482 aa16.63■□□□□ 0.25
LDLR-202ENST00000455727 CLRN2A0PK11 232 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 GCOM1H8Y6P7 765 aaPredicted RBP16.62■□□□□ 0.25
LDLR-202ENST00000455727 RBAK-RBAKDNI3L0D1 243 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 MEIS1O00470 390 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 PDXKO00764 312 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 POLR2MP0CAP2 368 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 RAD51AP2Q09MP3 1159 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 FAM83BQ5T0W9 1011 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 HGSNATQ68CP4 663 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 WDR93Q6P2C0 686 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 FRMD5Q7Z6J6 570 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 FAM83AQ86UY5 434 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 FAM160B2Q86V87 743 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 MSL3Q8N5Y2 521 aaKnown RBP16.62■□□□□ 0.25
LDLR-202ENST00000455727 CCDC155Q8N6L0 562 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 SMCR8Q8TEV9 937 aaPredicted RBP16.62■□□□□ 0.25
LDLR-202ENST00000455727 PNKPQ96T60 521 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 HSD17B14Q9BPX1 270 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 GBP3Q9H0R5 595 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 HDAC6Q9UBN7 1215 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 MAP2K7O14733 419 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 TACC1O75410 805 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 PRLRP16471 622 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 MUTP22033 750 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 BEND6Q5SZJ8 279 aaPredicted RBP16.62■□□□□ 0.25
LDLR-202ENST00000455727 OTOP1Q7RTM1 612 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 ZHX3Q9H4I2 956 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 VCPKMTQ9H867 229 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 EHMT1Q9H9B1 1298 aa16.62■□□□□ 0.25
LDLR-202ENST00000455727 MRPL11Q9Y3B7 192 aaKnown RBP16.62■□□□□ 0.25
LDLR-202ENST00000455727 MYH10P35580 1976 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms