RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 STAT5AP42229 794 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 ITGA1P56199 1179 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 EFEMP1Q12805 493 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 ZNF827Q17R98 1081 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 PLEKHG4Q58EX7 1191 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 KIAA0907Q7Z7F0 614 aaPredicted RBP5.83□□□□□ -1.48
USP40-209ENST00000452724 FAM26EQ8N5C1 309 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 PHOSPHO1Q8TCT1 267 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 TOE1Q96GM8 510 aaKnown RBP5.83□□□□□ -1.48
USP40-209ENST00000452724 MAGEB10Q96LZ2 347 aaPredicted RBP5.83□□□□□ -1.48
USP40-209ENST00000452724 CLUHP3Q96NS8 147 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 WRNIP1Q96S55 665 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 KRTAP9-3Q9BYQ3 159 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 KRTAP4-11Q9BYQ6 195 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 TRIM39Q9HCM9 518 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 PCDHA9Q9Y5H5 950 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 ARVCFO00192 962 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 RFPL3O75679 317 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 RASGRP1O95267 797 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 APPP05067 770 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 PAK1Q13153 545 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 PABPC4Q13310 644 aaKnown RBP eCLIP5.82□□□□□ -1.48
USP40-209ENST00000452724 C21orf62-AS1Q17RA5 79 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 EMC4Q5J8M3 183 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 PRAMEF18Q5VWM3 479 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 LGI4Q8N135 537 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 SCLYQ96I15 445 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 CLIC6Q96NY7 704 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 JAM3Q9BX67 310 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 DTLQ9NZJ0 730 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 NUB1Q9Y5A7 615 aa5.82□□□□□ -1.48
USP40-209ENST00000452724 MROH6A6NGR9 719 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 FAM47E-STBD1D6RA91 191 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 CYP4F22Q6NT55 531 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 FGD2Q7Z6J4 655 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 TRIM48Q8IWZ4 208 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 PCDH19Q8TAB3 1148 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 KCNJ15Q99712 375 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 SMOC1Q9H4F8 434 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 IPPKQ9H8X2 491 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 PLAAQ9Y263 795 aa5.81□□□□□ -1.48
USP40-209ENST00000452724 TCRBV16S1A1N1A0A5B0 115 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 DDX3XO00571 662 aaKnown RBP eCLIP5.8□□□□□ -1.48
USP40-209ENST00000452724 WNT9AO14904 365 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 TADA3O75528 432 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 SRGAP2CP0DJJ0 459 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 CR1LQ2VPA4 569 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 MCTP2Q6DN12 878 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 PLEKHH3Q7Z736 793 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 STK32CQ86UX6 486 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 ZC3H7AQ8IWR0 971 aaKnown RBP5.8□□□□□ -1.48
USP40-209ENST00000452724 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.8□□□□□ -1.48
USP40-209ENST00000452724 NINJ1Q92982 152 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 LCORQ96JN0 433 aaPredicted RBP5.8□□□□□ -1.48
USP40-209ENST00000452724 TMEM209Q96SK2 561 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 MYOTQ9UBF9 498 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 DUSP10Q9Y6W6 482 aa5.8□□□□□ -1.48
USP40-209ENST00000452724 TCRBV5S2A0A599 114 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 C9orf118A6NHY6 69 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 DNAJC8O75937 253 aaPredicted RBP5.79□□□□□ -1.48
USP40-209ENST00000452724 CLSTN1O94985 981 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 PLATP00750 562 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 CYP1A1P04798 512 aaPredicted RBP5.79□□□□□ -1.48
USP40-209ENST00000452724 ITGB3P05106 788 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 GNAT1P11488 350 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 SDSP20132 328 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 SPIRE1Q08AE8 756 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 SURF1Q15526 300 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 DALRD3Q5D0E6 543 aaKnown RBP5.79□□□□□ -1.48
USP40-209ENST00000452724 TAF7LQ5H9L4 462 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 NIM1KQ8IY84 436 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 TXNDC5Q8NBS9 432 aaKnown RBP5.79□□□□□ -1.48
USP40-209ENST00000452724 ARRDC4Q8NCT1 418 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 FBXW5Q969U6 566 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 GPR20Q99678 358 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 SYT3Q9BQG1 590 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 SLKQ9H2G2 1235 aaPredicted RBP5.79□□□□□ -1.48
USP40-209ENST00000452724 L2HGDHQ9H9P8 463 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 MAGEC2Q9UBF1 373 aaPredicted RBP5.79□□□□□ -1.48
USP40-209ENST00000452724 CADPSQ9ULU8 1353 aa5.79□□□□□ -1.48
USP40-209ENST00000452724 OPA1O60313 960 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 COL6A2P12110 1019 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 IGFALSP35858 605 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 GYS2P54840 703 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 NFKB2Q00653 900 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 FAM47CQ5HY64 1035 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 PRR31Q5SQ13 230 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 EGFLAMQ63HQ2 1017 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 TEPPQ6URK8 271 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 HHIPL2Q6UWX4 724 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 OTOP3Q7RTS5 596 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 DHX37Q8IY37 1157 aaKnown RBP5.78□□□□□ -1.48
USP40-209ENST00000452724 PIP4K2CQ8TBX8 421 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 SLC6A20Q9NP91 592 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 INTS7Q9NVH2 962 aaKnown RBP5.78□□□□□ -1.48
USP40-209ENST00000452724 SMPD4Q9NXE4 827 aa5.78□□□□□ -1.48
USP40-209ENST00000452724 TNPO3Q9Y5L0 923 aaKnown RBP5.78□□□□□ -1.48
USP40-209ENST00000452724 ZNF536O15090 1300 aa5.77□□□□□ -1.49
USP40-209ENST00000452724 CCDC66A2RUB6 948 aa5.77□□□□□ -1.49
USP40-209ENST00000452724 B4E1Z4 1266 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms