RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 BMS1Q14692 1282 aaKnown RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 PTPN21Q16825 1174 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 PEX26Q7Z412 305 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 ZBTB33Q86T24 672 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 SYCE1Q8N0S2 351 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 CCDC155Q8N6L0 562 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 IPO4Q8TEX9 1081 aaKnown RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 IFT81Q8WYA0 676 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 PSMB7Q99436 277 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 FAM49AQ9H0Q0 323 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 GABBR1Q9UBS5 961 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 PARP2Q9UGN5 583 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 MAD2L2Q9UI95 211 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 SHTN1A0MZ66 631 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 KIAA0754O94854 1291 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 MMP14P50281 582 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 ZNF157P51786 506 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 SFR1Q86XK3 245 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 ATP6V0A4Q9HBG4 840 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 POLD4Q9HCU8 107 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 ZNF302Q9NR11 478 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 XPOTO43592 962 aaKnown RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 POTEAQ6S8J7 498 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 ACER1Q8TDN7 264 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 TCP11Q8WWU5 503 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 ANKRD36BP1Q96IX9 119 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 EIF2AK1Q9BQI3 630 aaKnown RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 COL14A1Q05707 1796 aaKnown RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 TLR3O15455 904 aaKnown RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 CEP104O60308 925 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 VAV2P52735 878 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 OSTNP61366 133 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 TAF1CQ15572 869 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 DACT2Q5SW24 774 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 CCDC26Q8TAB7 109 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 LXNQ9BS40 222 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 EHD4Q9H223 541 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 KCNQ5Q9NR82 932 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 GINM1Q9NU53 330 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 FBXO2Q9UK22 296 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 ASB14A6NK59 587 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 MFAP3P55082 362 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 LACTBP83111 547 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-213ENST00000448038 TFAMQ00059 246 aaKnown RBP8.09□□□□□ -1.11
SYNE1-213ENST00000448038 TUBB2AQ13885 445 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 RPS6KA1Q15418 735 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 AK9Q5TCS8 1911 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 PPP4R3CPQ6ZMV5 832 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 TUBB2BQ9BVA1 445 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 VPS33BQ9H267 617 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 PVALEFA0A1B0GWK0 134 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 EZRP15311 586 aaKnown RBP8.09□□□□□ -1.11
SYNE1-213ENST00000448038 ECE1P42892 770 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 PSMC5P62195 406 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 CALCOCO2Q13137 446 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 MED10Q9BTT4 135 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 NRBP1Q9UHY1 535 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 GOLGA8IPA6NC78 632 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 GOLGA8JA6NMD2 632 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 DDNO94850 711 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-213ENST00000448038 CELF2O95319 508 aaKnown RBP8.09□□□□□ -1.11
SYNE1-213ENST00000448038 PRR29P0C7W0 189 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 HUNKP57058 714 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 EVCP57679 992 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 TKFCQ3LXA3 575 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 ZMYND12Q9H0C1 365 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 EPN1Q9Y6I3 576 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-213ENST00000448038 DAPK3O43293 454 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 ZSCAN20P17040 1043 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-213ENST00000448038 CDC25BP30305 580 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 EPHX2P34913 555 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 PTK2Q05397 1052 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 COASYQ13057 564 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 LRP10Q7Z4F1 713 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 CCDC91Q7Z6B0 441 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 CCDC117Q8IWD4 279 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-213ENST00000448038 ATG4CQ96DT6 458 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 SPATA33Q96N06 139 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 PSMD1Q99460 953 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 CCDC77Q9BR77 488 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 FBXO28Q9NVF7 368 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 HESX1Q9UBX0 185 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 NUB1Q9Y5A7 615 aa8.09□□□□□ -1.11
SYNE1-213ENST00000448038 RBL2Q08999 1139 aa8.09□□□□□ -1.12
SYNE1-213ENST00000448038 EPHA7Q15375 998 aa8.09□□□□□ -1.12
SYNE1-213ENST00000448038 CLEC17AQ6ZS10 378 aa8.09□□□□□ -1.12
SYNE1-213ENST00000448038 CCDC25Q86WR0 208 aa8.09□□□□□ -1.12
SYNE1-213ENST00000448038 ABI1Q8IZP0 508 aa8.09□□□□□ -1.12
SYNE1-213ENST00000448038 PROCA1Q8NCQ7 364 aaPredicted RBP8.09□□□□□ -1.12
SYNE1-213ENST00000448038 AGBL1Q96MI9 1066 aa8.09□□□□□ -1.12
SYNE1-213ENST00000448038 NACA2Q9H009 215 aa8.09□□□□□ -1.12
SYNE1-213ENST00000448038 MTRF1LQ9UGC7 380 aaKnown RBP8.09□□□□□ -1.12
SYNE1-213ENST00000448038 PPP2R2CQ9Y2T4 447 aa8.09□□□□□ -1.12
SYNE1-213ENST00000448038 PCDHA10Q9Y5I2 948 aa8.09□□□□□ -1.12
SYNE1-213ENST00000448038 ROBO1Q9Y6N7 1651 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 CCL15-CCL14A0A0B4J2E2 113 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 TNPO2O14787 897 aaKnown RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 ATP1A3P13637 1013 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 MXI1P50539 228 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms